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Genome-wide association studies identify four ER negative-specific breast cancer risk loci.


ABSTRACT: Estrogen receptor (ER)-negative tumors represent 20-30% of all breast cancers, with a higher proportion occurring in younger women and women of African ancestry. The etiology and clinical behavior of ER-negative tumors are different from those of tumors expressing ER (ER positive), including differences in genetic predisposition. To identify susceptibility loci specific to ER-negative disease, we combined in a meta-analysis 3 genome-wide association studies of 4,193 ER-negative breast cancer cases and 35,194 controls with a series of 40 follow-up studies (6,514 cases and 41,455 controls), genotyped using a custom Illumina array, iCOGS, developed by the Collaborative Oncological Gene-environment Study (COGS). SNPs at four loci, 1q32.1 (MDM4, P = 2.1 × 10(-12) and LGR6, P = 1.4 × 10(-8)), 2p24.1 (P = 4.6 × 10(-8)) and 16q12.2 (FTO, P = 4.0 × 10(-8)), were associated with ER-negative but not ER-positive breast cancer (P > 0.05). These findings provide further evidence for distinct etiological pathways associated with invasive ER-positive and ER-negative breast cancers.

SUBMITTER: Garcia-Closas M 

PROVIDER: S-EPMC3771695 | biostudies-literature | 2013 Apr

REPOSITORIES: biostudies-literature

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Genome-wide association studies identify four ER negative-specific breast cancer risk loci.

Garcia-Closas Montserrat M   Couch Fergus J FJ   Lindstrom Sara S   Michailidou Kyriaki K   Schmidt Marjanka K MK   Brook Mark N MN   Orr Nick N   Rhie Suhn Kyong SK   Riboli Elio E   Feigelson Heather S HS   Le Marchand Loic L   Buring Julie E JE   Eccles Diana D   Miron Penelope P   Fasching Peter A PA   Brauch Hiltrud H   Chang-Claude Jenny J   Carpenter Jane J   Godwin Andrew K AK   Nevanlinna Heli H   Giles Graham G GG   Cox Angela A   Hopper John L JL   Bolla Manjeet K MK   Wang Qin Q   Dennis Joe J   Dicks Ed E   Howat Will J WJ   Schoof Nils N   Bojesen Stig E SE   Lambrechts Diether D   Broeks Annegien A   Andrulis Irene L IL   Guénel Pascal P   Burwinkel Barbara B   Sawyer Elinor J EJ   Hollestelle Antoinette A   Fletcher Olivia O   Winqvist Robert R   Brenner Hermann H   Mannermaa Arto A   Hamann Ute U   Meindl Alfons A   Lindblom Annika A   Zheng Wei W   Devillee Peter P   Goldberg Mark S MS   Lubinski Jan J   Kristensen Vessela V   Swerdlow Anthony A   Anton-Culver Hoda H   Dörk Thilo T   Muir Kenneth K   Matsuo Keitaro K   Wu Anna H AH   Radice Paolo P   Teo Soo Hwang SH   Shu Xiao-Ou XO   Blot William W   Kang Daehee D   Hartman Mikael M   Sangrajrang Suleeporn S   Shen Chen-Yang CY   Southey Melissa C MC   Park Daniel J DJ   Hammet Fleur F   Stone Jennifer J   Veer Laura J Van't LJ   Rutgers Emiel J EJ   Lophatananon Artitaya A   Stewart-Brown Sarah S   Siriwanarangsan Pornthep P   Peto Julian J   Schrauder Michael G MG   Ekici Arif B AB   Beckmann Matthias W MW   Dos Santos Silva Isabel I   Johnson Nichola N   Warren Helen H   Tomlinson Ian I   Kerin Michael J MJ   Miller Nicola N   Marme Federick F   Schneeweiss Andreas A   Sohn Christof C   Truong Therese T   Laurent-Puig Pierre P   Kerbrat Pierre P   Nordestgaard Børge G BG   Nielsen Sune F SF   Flyger Henrik H   Milne Roger L RL   Perez Jose Ignacio Arias JI   Menéndez Primitiva P   Müller Heiko H   Arndt Volker V   Stegmaier Christa C   Lichtner Peter P   Lochmann Magdalena M   Justenhoven Christina C   Ko Yon-Dschun YD   Muranen Taru A TA   Aittomäki Kristiina K   Blomqvist Carl C   Greco Dario D   Heikkinen Tuomas T   Ito Hidemi H   Iwata Hiroji H   Yatabe Yasushi Y   Antonenkova Natalia N NN   Margolin Sara S   Kataja Vesa V   Kosma Veli-Matti VM   Hartikainen Jaana M JM   Balleine Rosemary R   Tseng Chiu-Chen CC   Berg David Van Den DV   Stram Daniel O DO   Neven Patrick P   Dieudonné Anne-Sophie AS   Leunen Karin K   Rudolph Anja A   Nickels Stefan S   Flesch-Janys Dieter D   Peterlongo Paolo P   Peissel Bernard B   Bernard Loris L   Olson Janet E JE   Wang Xianshu X   Stevens Kristen K   Severi Gianluca G   Baglietto Laura L   McLean Catriona C   Coetzee Gerhard A GA   Feng Ye Y   Henderson Brian E BE   Schumacher Fredrick F   Bogdanova Natalia V NV   Labrèche France F   Dumont Martine M   Yip Cheng Har CH   Taib Nur Aishah Mohd NA   Cheng Ching-Yu CY   Shrubsole Martha M   Long Jirong J   Pylkäs Katri K   Jukkola-Vuorinen Arja A   Kauppila Saila S   Knight Julia A JA   Glendon Gord G   Mulligan Anna Marie AM   Tollenaar Robertus A E M RA   Seynaeve Caroline M CM   Kriege Mieke M   Hooning Maartje J MJ   van den Ouweland Ans M W AM   van Deurzen Carolien H M CH   Lu Wei W   Gao Yu-Tang YT   Cai Hui H   Balasubramanian Sabapathy P SP   Cross Simon S SS   Reed Malcolm W R MW   Signorello Lisa L   Cai Qiuyin Q   Shah Mitul M   Miao Hui H   Chan Ching Wan CW   Chia Kee Seng KS   Jakubowska Anna A   Jaworska Katarzyna K   Durda Katarzyna K   Hsiung Chia-Ni CN   Wu Pei-Ei PE   Yu Jyh-Cherng JC   Ashworth Alan A   Jones Michael M   Tessier Daniel C DC   González-Neira Anna A   Pita Guillermo G   Alonso M Rosario MR   Vincent Daniel D   Bacot Francois F   Ambrosone Christine B CB   Bandera Elisa V EV   John Esther M EM   Chen Gary K GK   Hu Jennifer J JJ   Rodriguez-Gil Jorge L JL   Bernstein Leslie L   Press Michael F MF   Ziegler Regina G RG   Millikan Robert M RM   Deming-Halverson Sandra L SL   Nyante Sarah S   Ingles Sue A SA   Waisfisz Quinten Q   Tsimiklis Helen H   Makalic Enes E   Schmidt Daniel D   Bui Minh M   Gibson Lorna L   Müller-Myhsok Bertram B   Schmutzler Rita K RK   Hein Rebecca R   Dahmen Norbert N   Beckmann Lars L   Aaltonen Kirsimari K   Czene Kamila K   Irwanto Astrid A   Liu Jianjun J   Turnbull Clare C   Rahman Nazneen N   Meijers-Heijboer Hanne H   Uitterlinden Andre G AG   Rivadeneira Fernando F   Olswold Curtis C   Slager Susan S   Pilarski Robert R   Ademuyiwa Foluso F   Konstantopoulou Irene I   Martin Nicholas G NG   Montgomery Grant W GW   Slamon Dennis J DJ   Rauh Claudia C   Lux Michael P MP   Jud Sebastian M SM   Bruning Thomas T   Weaver Joellen J   Sharma Priyanka P   Pathak Harsh H   Tapper Will W   Gerty Sue S   Durcan Lorraine L   Trichopoulos Dimitrios D   Tumino Rosario R   Peeters Petra H PH   Kaaks Rudolf R   Campa Daniele D   Canzian Federico F   Weiderpass Elisabete E   Johansson Mattias M   Khaw Kay-Tee KT   Travis Ruth R   Clavel-Chapelon Françoise F   Kolonel Laurence N LN   Chen Constance C   Beck Andy A   Hankinson Susan E SE   Berg Christine D CD   Hoover Robert N RN   Lissowska Jolanta J   Figueroa Jonine D JD   Chasman Daniel I DI   Gaudet Mia M MM   Diver W Ryan WR   Willett Walter C WC   Hunter David J DJ   Simard Jacques J   Benitez Javier J   Dunning Alison M AM   Sherman Mark E ME   Chenevix-Trench Georgia G   Chanock Stephen J SJ   Hall Per P   Pharoah Paul D P PD   Vachon Celine C   Easton Douglas F DF   Haiman Christopher A CA   Kraft Peter P  

Nature genetics 20130401 4


Estrogen receptor (ER)-negative tumors represent 20-30% of all breast cancers, with a higher proportion occurring in younger women and women of African ancestry. The etiology and clinical behavior of ER-negative tumors are different from those of tumors expressing ER (ER positive), including differences in genetic predisposition. To identify susceptibility loci specific to ER-negative disease, we combined in a meta-analysis 3 genome-wide association studies of 4,193 ER-negative breast cancer cas  ...[more]

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