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Genotyping of enteric adenoviruses by using single-stranded conformation polymorphism analysis and heteroduplex mobility assay.


ABSTRACT: Single-stranded conformation polymorphism (SSCP) analysis and heteroduplex mobility assays (HMAs) were used to identify and genotype enteric adenoviruses (EAd). The results were compared to those of restriction endonuclease assays, species-specific PCRs, and direct nucleotide sequence analyses. Of the 31 stool samples tested, 15 isolates were identified as EAd and 7 were identified as nonenteric Ad by all methods. An agreement of 100% was found between the SSCP and HMA results.

SUBMITTER: Soares CC 

PROVIDER: S-EPMC387600 | biostudies-literature | 2004 Apr

REPOSITORIES: biostudies-literature

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Genotyping of enteric adenoviruses by using single-stranded conformation polymorphism analysis and heteroduplex mobility assay.

Soares Caroline C CC   Volotão Eduardo M EM   Albuquerque Maria Carolina M MC   Nozawa Carlos M CM   Linhares Rosa Elisa C RE   Volokhov Dmitriy D   Chizhikov Vladimir V   Lu Xiaoyan X   Erdman Dean D   Santos Norma N  

Journal of clinical microbiology 20040401 4


Single-stranded conformation polymorphism (SSCP) analysis and heteroduplex mobility assays (HMAs) were used to identify and genotype enteric adenoviruses (EAd). The results were compared to those of restriction endonuclease assays, species-specific PCRs, and direct nucleotide sequence analyses. Of the 31 stool samples tested, 15 isolates were identified as EAd and 7 were identified as nonenteric Ad by all methods. An agreement of 100% was found between the SSCP and HMA results. ...[more]

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