Browse
Submit Data
Databases
API
Help

Dataset Information

26 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of Ochroconis constricta UM 578, Isolated from Human Skin Scraping.

ABSTRACT: Ochroconis constricta is a soilborne dematiaceous fungus that has never been reported to be associated with human infection. Here we report the first draft genome sequence of strain UM 578, isolated from human skin scraping. The genomic information revealed will contribute to a better understanding of this species.

SUBMITTER: Chan CL

PROVIDER: S-EPMC3990737 | biostudies-literature | 2014 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of Ochroconis constricta UM 578, Isolated from Human Skin Scraping.

Chan Chai Ling CL Yew Su Mei SM Na Shiang Ling SL Tan Yung-Chie YC Lee Kok Wei KW Yee Wai-Yan WY Ngeow Yun Fong YF Ng Kee Peng KP

Genome announcements 20140417 2

Ochroconis constricta is a soilborne dematiaceous fungus that has never been reported to be associated with human infection. Here we report the first draft genome sequence of strain UM 578, isolated from human skin scraping. The genomic information revealed will contribute to a better understanding of this species. ...[more]

PMID: 24744321

Similar Datasets

Genome Anatomy of Pyrenochaeta unguis-hominis UM 256, a Multidrug Resistant Strain Isolated from Skin Scraping.

Project description:Pyrenochaeta unguis-hominis is a rare human pathogen that causes infection in human skin and nail. P. unguis-hominis has received little attention, and thus, the basic biology and pathogenicity of this fungus is not fully understood. In this study, we performed in-depth analysis of the P. unguis-hominis UM 256 genome that was isolated from the skin scraping of a dermatitis patient. The isolate was identified to species level using a comprehensive multilocus phylogenetic analysis of the genus Pyrenochaeta. The assembled UM 256 genome has a size of 35.5 Mb and encodes 12,545 putative genes, and 0.34% of the assembled genome is predicted transposable elements. Its genomic features propose that the fungus is a heterothallic fungus that encodes a wide array of plant cell wall degrading enzymes, peptidases, and secondary metabolite biosynthetic enzymes. Antifungal drug resistance genes including MDR, CDR, and ERG11/CYP51 were identified in P. unguis-hominis UM 256, which may confer resistance to this fungus. The genome analysis of P. unguis-hominis provides an insight into molecular and genetic basis of the fungal lifestyles, understanding the unrevealed biology of antifungal resistance in this fungus.

| S-EPMC5023194 | biostudies-literature

Draft Genome Sequence of Pseudomonas aeruginosa Strain PA14-UM.

Project description:Pseudomonas aeruginosa is a Gram-negative nosocomial pathogen that is a leading cause of morbidity and mortality in cystic fibrosis patients and immunocompromised individuals worldwide. The isolate examined in this study, PA14-UM, is a well-characterized isolate utilized in studies from the University of Maryland.

| S-EPMC7660996 | biostudies-literature

Draft Genome Sequence of Streptomyces mexicanus Strain Q0842, Isolated from Human Skin.

Project description:In 2003, Streptomyces mexicanus was reported as a novel xylanolytic bacterial species isolated from soil; a partial genome sequence was determined. In 2019, a strain from the same species was isolated from a hand skin swab sample from a healthy French woman. Genome sequencing revealed an 8,011,832-bp sequence with a GC content of 72.5%.

| S-EPMC7595954 | biostudies-literature

Draft Genome Sequence of a New Staphylococcal Species Isolated from Human Skin.

Project description:A hemolytic staphylococcal strain, Staphylococcus sp. strain 170179, was isolated from healthy human skin. Genome sequencing and comparison of strain 170179 to other staphylococci revealed a relatedness to Staphylococcus haemolyticus with an average nucleotide identity of 87.5%, indicating that Staphylococcus sp. 170179 belongs to a separate species.

| S-EPMC7005121 | biostudies-literature

Draft Genome Sequence of Kytococcus schroeteri Strain H01, Isolated from Human Skin.

Project description:Kytococcus schroeteri strain H01 was isolated from the skin of a healthy volunteer who underwent erythromycin treatment for a skin disorder 1 year prior. The draft genome consists of 2.38 Mb, a G+C content of 73.06%, and 2,221 protein coding sequences. This is the first genome characterization of a K. schroeteri strain isolated from human skin.

| S-EPMC6776787 | biostudies-literature

Genome sequencing of Neoscytalidium dimidiatum UM 880 isolated from skin scraping

Project description:Genome sequencing of Neoscytalidium dimidiatum UM 880 by Illumina Sequencing Platform

| PRJEB14660 | ENA

Draft Genome Sequence of a Novel Methylobacterium brachiatum Strain Isolated from Human Skin.

Project description:Methylobacterium brachiatum MBRA is an aerobic alphaproteobacterium isolated from the human skin on methanol-containing minimal medium. The genome was sequenced using Illumina and Nanopore technology, and the genome was assembled using Unicycler. M. brachiatum MBRA possesses two xoxF genes, one gene pair, mxaF and mxaI, and a complete serine pathway.

| S-EPMC7729408 | biostudies-literature

Draft Genomic Sequence of Escherichia coli Sequence Type 131, Isolated from Retail Chicken Skin.

Project description:Escherichia coli sequence type 131 (ST131) is a foodborne pathogen increasingly associated with urinary tract infections. We report here the draft genomic sequence of ST131 B7S75, isolated from retail chicken skin, including information about its virulence factors and antibiotic resistance.

| S-EPMC6376423 | biostudies-literature

Draft Genome Sequence of Piscirickettsia litoralis, Isolated from Seawater.

Project description:One species of Piscirickettsia, a pathogen of salmonid fish, has been described. The genome sequence of a putative second and free-living species may provide insights into the evolution of pathogenicity in the genus.

| S-EPMC5095486 | biostudies-literature

Draft Genome Sequence of Mycobacterium fortuitum Isolated from Murine Brain.

Project description:Mycobacterium fortuitumsubsp.fortuitumATCC 6841 is a type and standard laboratory testing quality control strain. We report here the completed draft genome sequence for a strain isolated from the brains ofM. fortuitum-infected mice.

| S-EPMC4816625 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data