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MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data.


ABSTRACT: Metabolic reaction maps allow visualization of genome-scale models and high-throughput data in a format familiar to many biologists. However, creating a map of a large metabolic model is a difficult and time-consuming process. MetDraw fully automates the map-drawing process for metabolic models containing hundreds to thousands of reactions. MetDraw can also overlay high-throughput 'omics' data directly on the generated maps.

SUBMITTER: Jensen PA 

PROVIDER: S-EPMC3998126 | biostudies-literature | 2014 May

REPOSITORIES: biostudies-literature

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MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data.

Jensen Paul A PA   Papin Jason A JA  

Bioinformatics (Oxford, England) 20140109 9


<h4>Motivation</h4>Metabolic reaction maps allow visualization of genome-scale models and high-throughput data in a format familiar to many biologists. However, creating a map of a large metabolic model is a difficult and time-consuming process. MetDraw fully automates the map-drawing process for metabolic models containing hundreds to thousands of reactions. MetDraw can also overlay high-throughput 'omics' data directly on the generated maps. ...[more]

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