Dataset Information

Molecular characterization of the full kobuvirus genome in a cat.

ABSTRACT: Kobuviruses, which belong to the family Picornaviridae, have been detected in fecal samples from infected animals with or without diarrhea. Here, we report the first complete genome sequence of a feline kobuvirus (FKoV) strain, FK-13, identified from the feces of a cat with diarrhea in South Korea in 2011.

SUBMITTER: Cho YY

PROVIDER: S-EPMC4007995 | biostudies-literature | 2014 May

REPOSITORIES: biostudies-literature

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Molecular characterization of the full kobuvirus genome in a cat.

Cho Yoon-Young YY Lim Seong-In SI Kim Yong Kwan YK Song Jae-Young JY Lee Joong-Bok JB An Dong-Jun DJ

Genome announcements 20140501 2

Kobuviruses, which belong to the family Picornaviridae, have been detected in fecal samples from infected animals with or without diarrhea. Here, we report the first complete genome sequence of a feline kobuvirus (FKoV) strain, FK-13, identified from the feces of a cat with diarrhea in South Korea in 2011. ...[more]

PMID: 24786960

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Project description:Feline kobuvirus (FeKoV), a novel picornavirus of the genus kobuvirus, was initially identified in the feces of cats with diarrhea in South Korea in 2013. To date, there is only one report of the circulation of kobuvirus in cats in southern China. To investigate the presence and genetic variability of FeKoV in northeast China, 197 fecal samples were collected from 105 cats with obvious diarrhea and 92 asymptomatic cats in Shenyang, Jinzhou, Changchun, Jilin and Harbin regions, Northeast China, and viruses were detected by RT-PCR with universal primers targeting all kobuviruses. Kobuvirus was identified in 28 fecal samples with an overall prevalence of 14.2% (28/197) of which 20 samples were co-infected with feline parvovirus (FPV) and/or feline bocavirus (FBoV). Diarrhoeic cats had a higher kobuvirus prevalence (19.1%, 20/105) than asymptomatic cats (8.7%, 8/92). By genetic analysis based on partial 3D gene, all kobuvirus-positive samples were more closely related to previous FeKoV strains with high identities of 90.5%-97.8% and 96.6%-100% at the nucleotide and amino acid levels. Additionally, phylogenetic analysis based on the complete VP1 gene indicated that all FeKoV strains identified in this study were placed into a cluster, which separated from other reference strains previously reported, and three identical amino acid substitutions were present at the C-terminal of the VP1 protein for these FeKoV strains. Furthermore, two complete FeKoV polyprotein genomes were successfully obtained from two positive samples and designated 16JZ0605 and 17CC0811, respectively. The two strains shared 92.9%-94.9% nucleotide identities and 96.8%-98.4% amino acid identities to FeKoV prototype strains. Phylogenetic analysis indicated that FeKoVs were clustered according to their geographical regions, albeit with limited sequences support. This study provides the first molecular evidence that FeKoV circulates in cats in northeast China, and these FeKoVs exhibit genetic diversity and unique evolutionary trend.

Dataset Information

Molecular characterization of the full kobuvirus genome in a cat.

Publications

Molecular characterization of the full kobuvirus genome in a cat.

Similar Datasets

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