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Homology Model and Docking-Based Virtual Screening for Ligands of the ?1 Receptor.

ABSTRACT: This study presents for the first time the 3D model of the ?1 receptor protein as obtained from homology modeling techniques, shows the applicability of this structure to docking-based virtual screening, defines a computational strategy to optimize the results based on a combination of 3D pharmacophore-based docking and MM/PBSA free energy of binding scoring, and provides evidence that these in silico models and recipes are powerful tools on which virtual screening of new ?1 ligands can be based. In particular, the validation of the applicability of docking-based virtual screening to homology models is of utmost importance, since no crystal structure is available to date for the ?1 receptor, and this missing information still constitutes a major hurdle for a rational ligand design for this important protein target.

SUBMITTER: Laurini E

PROVIDER: S-EPMC4017991 | biostudies-literature | 2011 Nov

REPOSITORIES: biostudies-literature

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Homology Model and Docking-Based Virtual Screening for Ligands of the σ1 Receptor.

Laurini Erik E Col Valentina Dal VD Mamolo Maria Grazia MG Zampieri Daniele D Posocco Paola P Fermeglia Maurizio M Vio Luciano L Pricl Sabrina S

ACS medicinal chemistry letters 20110827 11

This study presents for the first time the 3D model of the σ1 receptor protein as obtained from homology modeling techniques, shows the applicability of this structure to docking-based virtual screening, defines a computational strategy to optimize the results based on a combination of 3D pharmacophore-based docking and MM/PBSA free energy of binding scoring, and provides evidence that these in silico models and recipes are powerful tools on which virtual screening of new σ1 ligands can be based ...[more]

PMID: 24900272

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