Dataset Information

A unified framework for glaucoma progression detection using Heidelberg Retina Tomograph images.

ABSTRACT: Glaucoma, the second leading cause of blindness worldwide, is an optic neuropathy characterized by distinctive changes in the optic nerve head (ONH) and visual field. The detection of glaucomatous progression is one of the most important and most challenging aspects of primary open angle glaucoma (OAG) management. In this context, ocular imaging equipment is increasingly sophisticated, providing quantitative tools to measure structural changes in ONH topography, an essential element in determining whether the disease is getting worse. In particular, the Heidelberg Retina Tomograph (HRT), a confocal scanning laser technology, has been commonly used to detect glaucoma and monitor its progression. In this paper, we present a new framework for detection of glaucomatous progression using HRT images. In contrast to previous works that do not integrate a priori knowledge available in the images, particularly the spatial pixel dependency in the change detection map, the Markov Random Field is proposed to handle such dependency. To the best of our knowledge, this is the first application of the Variational Expectation Maximization (VEM) algorithm for inferring topographic ONH changes in the glaucoma progression detection framework. Diagnostic performance of the proposed framework is compared to recently proposed methods of progression detection.

SUBMITTER: Belghith A

PROVIDER: S-EPMC4053521 | biostudies-literature | 2014 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

A unified framework for glaucoma progression detection using Heidelberg Retina Tomograph images.

Belghith Akram A Balasubramanian Madhusudhanan M Bowd Christopher C Weinreb Robert N RN Zangwill Linda M LM

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society 20140313 5

Glaucoma, the second leading cause of blindness worldwide, is an optic neuropathy characterized by distinctive changes in the optic nerve head (ONH) and visual field. The detection of glaucomatous progression is one of the most important and most challenging aspects of primary open angle glaucoma (OAG) management. In this context, ocular imaging equipment is increasingly sophisticated, providing quantitative tools to measure structural changes in ONH topography, an essential element in determini ...[more]

PMID: 24709053

Similar Datasets

Project description:IntroductionCerebral microbleeds (CMBs) are associated with white matter damage, and various neurodegenerative and cerebrovascular diseases. CMBs occur as small, circular hypointense lesions on T2*-weighted gradient recalled echo (GRE) and susceptibility-weighted imaging (SWI) images, and hyperintense on quantitative susceptibility mapping (QSM) images due to their paramagnetic nature. Accurate automated detection of CMBs would help to determine quantitative imaging biomarkers (e.g., CMB count) on large datasets. In this work, we propose a fully automated, deep learning-based, 3-step algorithm, using structural and anatomical properties of CMBs from any single input image modality (e.g., GRE/SWI/QSM) for their accurate detections.MethodsIn our method, the first step consists of an initial candidate detection step that detects CMBs with high sensitivity. In the second step, candidate discrimination step is performed using a knowledge distillation framework, with a multi-tasking teacher network that guides the student network to classify CMB and non-CMB instances in an offline manner. Finally, a morphological clean-up step further reduces false positives using anatomical constraints. We used four datasets consisting of different modalities specified above, acquired using various protocols and with a variety of pathological and demographic characteristics.ResultsOn cross-validation within datasets, our method achieved a cluster-wise true positive rate (TPR) of over 90% with an average of <2 false positives per subject. The knowledge distillation framework improves the cluster-wise TPR of the student model by 15%. Our method is flexible in terms of the input modality and provides comparable cluster-wise TPR and better cluster-wise precision compared to existing state-of-the-art methods. When evaluating across different datasets, our method showed good generalizability with a cluster-wise TPR >80 % with different modalities. The python implementation of the proposed method is openly available.

Project description:Microaneurysms (MAs) are pathognomonic signs that help clinicians to detect diabetic retinopathy (DR) in the early stages. Automatic detection of MA in retinal images is an active area of research due to its application in screening processes for DR which is one of the main reasons of blindness amongst the working-age population. The focus of these works is on the automatic detection of MAs in en face retinal images like fundus color and Fluorescein Angiography (FA). On the other hand, detection of MAs from Optical Coherence Tomography (OCT) images has 2 main advantages: first, OCT is a non-invasive imaging technique that does not require injection, therefore is safer. Secondly, because of the proven application of OCT in detection of Age-Related Macular Degeneration, Diabetic Macular Edema, and normal cases, thanks to detecting MAs in OCT, extensive information is obtained by using this imaging technique. In this research, the concentration is on the diagnosis of MAs using deep learning in the OCT images which represent in-depth structure of retinal layers. To this end, OCT B-scans should be divided into strips and MA patterns should be searched in the resulted strips. Since we need a dataset comprising OCT image strips with suitable labels and such large labelled datasets are not yet available, we have created it. For this purpose, an exact registration method is utilized to align OCT images with FA photographs. Then, with the help of corresponding FA images, OCT image strips are created from OCT B-scans in four labels, namely MA, normal, abnormal, and vessel. Once the dataset of image strips is prepared, a stacked generalization (stacking) ensemble of four fine-tuned, pre-trained convolutional neural networks is trained to classify the strips of OCT images into the mentioned classes. FA images are used once to create OCT strips for training process and they are no longer needed for subsequent steps. Once the stacking ensemble model is obtained, it will be used to classify the OCT strips in the test process. The results demonstrate that the proposed framework classifies overall OCT image strips and OCT strips containing MAs with accuracy scores of 0.982 and 0.987, respectively.

Dataset Information

A unified framework for glaucoma progression detection using Heidelberg Retina Tomograph images.

Publications

A unified framework for glaucoma progression detection using Heidelberg Retina Tomograph images.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets