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An assessment of the diversity of culturable bacteria from main root of sugar beet.


ABSTRACT: The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (?99% identity). The most abundant phylum was Proteobacteria (72.5-77.2%), followed by Actinobacteria (9.8-16.6%) and Bacteroidetes (4.3-15.4%). Alphaproteobacteria (46.7-64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium.

SUBMITTER: Okazaki K 

PROVIDER: S-EPMC4103529 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature

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An assessment of the diversity of culturable bacteria from main root of sugar beet.

Okazaki Kazuyuki K   Iino Takao T   Kuroda Yosuke Y   Taguchi Kazunori K   Takahashi Hiroyuki H   Ohwada Takuji T   Tsurumaru Hiroto H   Okubo Takashi T   Minamisawa Kiwamu K   Ikeda Seishi S  

Microbes and environments 20140430 2


The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5-77.2%), followed by Actinobacteria (9.8-16.6%) and Bacteroidetes (4.3-15.4%). Alphaproteobacteria (46.7-64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia wer  ...[more]

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