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In vivo HIV-1 hypermutation and viral loads among antiretroviral-naive Brazilian patients.

ABSTRACT: Hypermutation alludes to an excessive number of specific guanine-to-adenine (G- >A) substitutions in proviral DNA and this phenomenon is attributed to the catalytic activity of cellular APOBECs. Population studies relating hypermutation and the progression of infection by human immunodeficiency virus type 1 (HIV-1) have been performed to elucidate the effect of hypermutation on the natural course of HIV-1 infection. However, the many different approaches employed to assess hypermutation in nucleotide sequences render the comparison of results difficult. This study selected 157 treatment-naive patients and sought to correlate the hypermutation level of the proviral sequences in clinical samples with demographic variables, HIV-1 RNA viral load, and the level of CD4(+) T cells. Nested touchdown polymerase chain reaction (PCR) was performed with specific primers to detect hypermutation in the region of HIV-1 integrase, and the amplified sequences were run in agarose gels with HA-Yellow. The analysis of gel migration patterns using the k-means clustering method was validated by its agreement with the results obtained with the software Hypermut. Hypermutation was found in 31.2% of the investigated samples, and a correlation was observed between higher hypermutation levels and higher viral load levels. These findings suggest a high frequency of hypermutation detection in a Brazilian cohort, which can reflect a particular characteristic of this population, but also can result from the method approach by aiming at hypermutation-sensitive sites. Furthermore, we found that hypermutation events are pervasive during HIV-1 infection as a consequence of high viral replication, reflecting its role during disease progression.

SUBMITTER: de Lima-Stein ML

PROVIDER: S-EPMC4151062 | biostudies-literature | 2014 Sep

REPOSITORIES: biostudies-literature

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In vivo HIV-1 hypermutation and viral loads among antiretroviral-naive Brazilian patients.

de Lima-Stein Mariana Leão ML Alkmim Wagner Tadeu WT Bizinoto Maria Clara de Souza MC Lopez Luis Fernandez LF Burattini Marcelo Nascimento MN Maricato Juliana Terzi JT Giron Leila L Sucupira Maria Cecília Araripe MC Diaz Ricardo Sobhie RS Janini Luiz Mario LM

AIDS research and human retroviruses 20140825 9

Hypermutation alludes to an excessive number of specific guanine-to-adenine (G- >A) substitutions in proviral DNA and this phenomenon is attributed to the catalytic activity of cellular APOBECs. Population studies relating hypermutation and the progression of infection by human immunodeficiency virus type 1 (HIV-1) have been performed to elucidate the effect of hypermutation on the natural course of HIV-1 infection. However, the many different approaches employed to assess hypermutation in nucle ...[more]

PMID: 25065371

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Dataset Information

In vivo HIV-1 hypermutation and viral loads among antiretroviral-naive Brazilian patients.

Publications

In vivo HIV-1 hypermutation and viral loads among antiretroviral-naive Brazilian patients.

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