Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

All-Optical Sensing of the Components of the Internal Local Electric Field in Proteins.

ABSTRACT: Here, we present a new all-optical method of interrogation of the internal electric field vector inside proteins. The method is based on experimental evaluation of the permanent dipole moment change upon excitation and the pure electronic transition frequency of a fluorophore embedded in a protein matrix. The permanent dipole moment change can be obtained from two-photon absorption measurements. In addition, permanent dipole moment change, tensor of polarizability change, and transition frequency for the free chromophore should be calculated quantum-mechanically. This allows obtaining the components of the electric field by considering the second-order Stark shift. We use the fluorescent protein mCherry as an example to demonstrate the applicability of the method.

SUBMITTER: Drobizhev M

PROVIDER: S-EPMC4238891 | biostudies-literature | 2012 Oct

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

All-Optical Sensing of the Components of the Internal Local Electric Field in Proteins.

Drobizhev M M Scott J N JN Callis P R PR Rebane A A

IEEE photonics journal 20121001 5

Here, we present a new all-optical method of interrogation of the internal electric field vector inside proteins. The method is based on experimental evaluation of the permanent dipole moment change upon excitation and the pure electronic transition frequency of a fluorophore embedded in a protein matrix. The permanent dipole moment change can be obtained from two-photon absorption measurements. In addition, permanent dipole moment change, tensor of polarizability change, and transition frequenc ...[more]

PMID: 25419440

Similar Datasets

Manipulation of local optical properties and structures in molybdenum-disulfide monolayers using electric field-assisted near-field techniques.

Project description:Remarkable optical properties, such as quantum light emission and large optical nonlinearity, have been observed in peculiar local sites of transition metal dichalcogenide monolayers, and the ability to tune such properties is of great importance for their optoelectronic applications. For that purpose, it is crucial to elucidate and tune their local optical properties simultaneously. Here, we develop an electric field-assisted near-field technique. Using this technique we can clarify and tune the local optical properties simultaneously with a spatial resolution of approximately 100 nm due to the electric field from the cantilever. The photoluminescence at local sites in molybdenum-disulfide (MoS2) monolayers is reversibly modulated, and the inhomogeneity of the charge neutral points and quantum yields is suggested. We successfully etch MoS2 crystals and fabricate nanoribbons using near-field techniques in combination with an electric field. This study creates a way to tune the local optical properties and to freely design the structural shapes of atomic monolayers using near-field optics.

| S-EPMC5380953 | biostudies-literature

Superstable potassium metal batteries with a controllable internal electric field.

Project description:Stable potassium metal batteries (PMBs) are promising candidates for electrical energy storage due to their ability to reversibly store electrical energy at a low cost. However, dendritic growth and large volume changes hinder their practical application. Here, referring to the morphology and structure of a virus, a bionic virus-like-carbon microsphere (BVC) was designed as the anode host for a PMB. A BVC with a three-dimensional structure can not only control the electric field, which can suppress dendrite formation, but can also provide a larger space to accommodate the volume change during the cycle progress. The designed potassium (K) metal anode exhibits excellent cycle life and stability (during 1800 h of repeated plating/stripping of K at a current density of 0.1 mA cm-2, K-BVC can realize a very stable K metal anode with low voltage hysteresis). Stable cyclability and improved rate capability can be realized in a full cell using Prussian blue over 400 cycles. This research provides a new idea for the development of stable K metal anodes and may pave the way for the practical application of next-generation metal batteries.

| S-EPMC11197696 | biostudies-literature

Anion-exchange-mediated internal electric field for boosting photogenerated carrier separation and utilization.

Project description:Heterojunctions modulated internal electric field (IEF) usually result in suboptimal efficiencies in carrier separation and utilization because of the narrow IEF distribution and long migration paths of photocarriers. In this work, we report distinctive bismuth oxyhydroxide compound nanorods (denoted as BOH NRs) featuring surface-exposed open channels and a simple chemical composition; by simply modifying the bulk anion layers to overcome the limitations of heterojunctions, the bulk IEF could be readily modulated. Benefiting from the unique crystal structure and the localization of valence electrons, the bulk IEF intensity increases with the atomic number of introduced halide anions. Therefore, A low exchange ratio (~10%) with halide anions (I-, Br-, Cl-) gives rise to a prominent elevation in carrier separation efficiency and better photocatalytic performance for benzylamine coupling oxidation. Here, our work offers new insights into the design and optimization of semiconductor photocatalysts.

| S-EPMC8368037 | biostudies-literature

Electric-field-driven magnetic domain wall as a microscale magneto-optical shutter.

Project description:Nowadays, spintronics considers magnetic domain walls as a kind of nanodeviсe that demands for switching much less energy in comparison to homogeneous process. We propose and demonstrate a new concept for the light control via electric field applied locally to a magnetic domain wall playing the role of nanodevice. In detail, we charged a 15-μm-thick metallic tip to generate strong non-uniform electric field in the vicinity of the domain wall in the iron garnet film. The electric field influences the domain wall due to flexomagnetoelectric effect and causes the domain wall shift. The resulting displacement of the domain wall is up to 1/3 of domain width and allows to demonstrate a novel type of the electrically controlled magneto-optical shutter. Polarized laser beam focused on the electric-field-driven domain wall was used to demonstrate the concept of a microscale Faraday modulator. We obtained different regimes of the light modulation - linear, nonlinear and tri-stable - for the same domain wall with corresponding controllable displacement features. Such variability to control of domain wall's displacement with spatial scale of about 10 μm makes the proposed concept very promising for nanophotonics and spintronics.

| S-EPMC5428230 | biostudies-literature

Ester carbonyl vibration as a sensitive probe of protein local electric field.

Project description:The ability to quantify the local electrostatic environment of proteins and protein/peptide assemblies is key to gaining a microscopic understanding of many biological interactions and processes. Herein, we show that the ester carbonyl stretching vibration of two non-natural amino acids, L-aspartic acid 4-methyl ester and L-glutamic acid 5-methyl ester, is a convenient and sensitive probe in this regard, since its frequency correlates linearly with the local electrostatic field for both hydrogen-bonding and non-hydrogen-bonding environments. We expect that the resultant frequency-electric-field map will find use in various applications. Furthermore, we show that, when situated in a non-hydrogen-bonding environment, this probe can also be used to measure the local dielectric constant (?). For example, its application to amyloid fibrils formed by A?(16-22) revealed that the interior of such ?-sheet assemblies has an ??value of approximately 5.6.

| S-EPMC4104746 | biostudies-literature

High sensitive space electric field sensing based on micro fiber interferometer with field force driven gold nanofilm.

Project description:The traditional electrical field sensing can be realized by utilizing electro-optic materials or liquid crystals, and has limitations of easy breakdown, free assembly and difficult measurement of low-frequency. Here, we propose a new method to realize safe measurement of spatial dynamic electric field by using a micro fiber interferometer integrated with gold nanofilm. The energy of the electric charge received through antenna forms the intrinsic electric field with two micro electrodes, one of which is the 120 nm gold film vibration beam micromachined by femtosecond lasers and integrated with the micro fiber. The change of the intrinsic electric field force due to the spatial electric field will cause the vibration of the film beam. By demodulating the output signal of the micro fiber interferometer, the electric field can be measured. We demonstrate the detectable frequency ranges from tens of Hz to tens of KHz, and the minimum electric field intensity is ~200 V/m at 1 KHz. Our electric field measurement technology combining optical fiber interference with gold nanostructures shows the advantages of security, high sensitivity, compact size, and multiplexed multi-point and remote detection.

| S-EPMC4623471 | biostudies-literature

Electric-field-induced local and mesoscale structural changes in polycrystalline dielectrics and ferroelectrics.

Project description:The atomic-scale response of dielectrics/ferroelectrics to electric fields is central to their functionality. Here we introduce an in situ characterization method that reveals changes in the local atomic structure in polycrystalline materials under fields. The method employs atomic pair distribution functions (PDFs), determined from X-ray total scattering that depends on orientation relative to the applied field, to probe structural changes over length scales from sub-Ångstrom to several nanometres. The PDF is sensitive to local ionic displacements and their short-range order, a key uniqueness relative to other techniques. The method is applied to representative ferroelectrics, BaTiO3 and Na½Bi½TiO3, and dielectric SrTiO3. For Na½Bi½TiO3, the results reveal an abrupt field-induced monoclinic to rhombohedral phase transition, accompanied by ordering of the local Bi displacements and reorientation of the nanoscale ferroelectric domains. For BaTiO3 and SrTiO3, the local/nanoscale structural changes observed in the PDFs are dominated by piezoelectric lattice strain and ionic polarizability, respectively.

| S-EPMC4589771 | biostudies-literature

Internal force field in proteins seen by divergence entropy.

Project description:The characteristic distribution of non-binding interactions in a protein is described. It establishes that hydrophobic interactions can be characterized by suitable 3D Gauss functions while electrostatic interactions generally follow a random distribution. The implementation of this observation suggests differentiated optimization procedure for these two types of interactions. The electrostatic interaction may follow traditional energy optimization while the criteria for convergence shall measure the accordance with 3-D Gauss function.

| S-EPMC3134777 | biostudies-literature

Lattice distortion induced internal electric field in TiO2 photoelectrode for efficient charge separation and transfer.

Project description:Providing sufficient driving force for charge separation and transfer (CST) is a critical issue in photoelectrochemical (PEC) energy conversion. Normally, the driving force is derived mainly from band bending at the photoelectrode/electrolyte interface but negligible in the bulk. To boost the bulky driving force, we report a rational strategy to create effective electric field via controllable lattice distortion in the bulk of a semiconductor film. This concept is verified by the lithiation of a classic TiO2 (Li-TiO2) photoelectrode, which leads to significant distortion of the TiO6 unit cells in the bulk with well-aligned dipole moment. A remarkable internal built-in electric field of ~2.1?×?102?V?m-1 throughout the Li-TiO2 film is created to provide strong driving force for bulky CST. The photoelectrode demonstrates an over 750% improvement of photocurrent density and 100?mV negative shift of onset potential upon the lithiation compared to that of pristine TiO2 film.

| S-EPMC7195485 | biostudies-literature

Electric field-induced direct delivery of proteins by a nanofountain probe.

Project description:We report nanofabrication of protein dot and line patterns using a nanofountain atomic force microscopy probe (NFP). Biomolecules are continuously fed in solution through an integrated microfluidic system, and deposited directly onto a substrate. Deposition is controlled by application of an electric potential of appropriate sign and magnitude between the probe reservoir and substrate. Submicron dot and line molecular patterns were generated with resolution that depended on the magnitude of the applied voltage, dwell time, and writing speed. By using an energetic argument and a Kelvin condensation model, the quasi-equilibrium liquid-air interface at the probe tip was determined. The analysis revealed the origin of the need for electric fields in achieving protein transport to the substrate and confirmed experimental observations suggesting that pattern resolution is controlled by tip sharpness and not overall probe aperture. As such, the NFP combines the high-resolution of dip-pen nanolithography with the efficient continuous liquid feeding of micropipettes while allowing scalability to 1- and 2D probe arrays for high throughput.

| S-EPMC2575438 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data