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Genetic history of an archaic hominin group from Denisova Cave in Siberia.

ABSTRACT: Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This individual is from a group that shares a common origin with Neanderthals. This population was not involved in the putative gene flow from Neanderthals into Eurasians; however, the data suggest that it contributed 4-6% of its genetic material to the genomes of present-day Melanesians. We designate this hominin population 'Denisovans' and suggest that it may have been widespread in Asia during the Late Pleistocene epoch. A tooth found in Denisova Cave carries a mitochondrial genome highly similar to that of the finger bone. This tooth shares no derived morphological features with Neanderthals or modern humans, further indicating that Denisovans have an evolutionary history distinct from Neanderthals and modern humans.

SUBMITTER: Reich D

PROVIDER: S-EPMC4306417 | biostudies-literature | 2010 Dec

REPOSITORIES: biostudies-literature

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Genetic history of an archaic hominin group from Denisova Cave in Siberia.

Reich David D Green Richard E RE Kircher Martin M Krause Johannes J Patterson Nick N Durand Eric Y EY Viola Bence B Briggs Adrian W AW Stenzel Udo U Johnson Philip L F PL Maricic Tomislav T Good Jeffrey M JM Marques-Bonet Tomas T Alkan Can C Fu Qiaomei Q Mallick Swapan S Li Heng H Meyer Matthias M Eichler Evan E EE Stoneking Mark M Richards Michael M Talamo Sahra S Shunkov Michael V MV Derevianko Anatoli P AP Hublin Jean-Jacques JJ Kelso Janet J Slatkin Montgomery M Pääbo Svante S

Nature 20101201 7327

Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This individual is from a group that shares a common origin with Neanderthals. This population was not involved in the putative gene flow from Neanderthals into Eurasians; however, the data suggest that it contributed 4-6% of its genetic material to the genomes of present-day Melanesians. We designate this hominin population 'Denisovans ...[more]

PMID: 21179161

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Project description:Excavations at the Longtan Cave, Hexian, Anhui Province of Eastern China, have yielded several hominin fossils including crania, mandibular fragments, and teeth currently dated to 412 ± 25 ka. While previous studies have focused on the cranial remains, there are no detailed analyses of the dental evidence. In this study, we provide metric and morphological descriptions and comparisons of ten teeth recovered from Hexian, including microcomputed tomography analyses. Our results indicate that the Hexian teeth are metrically and morphologically primitive and overlap with H. ergaster and East Asian Early and mid-Middle Pleistocene hominins in their large dimensions and occlusal complexities. However, the Hexian teeth differ from H. ergaster in features such as conspicuous vertical grooves on the labial/buccal surfaces of the central incisor and the upper premolar, the crown outline shapes of upper and lower molars and the numbers, shapes, and divergences of the roots. Despite their close geological ages, the Hexian teeth are also more primitive than Zhoukoudian specimens, and resemble Sangiran Early Pleistocene teeth. In addition, no typical Neanderthal features have been identified in the Hexian sample. Our study highlights the metrical and morphological primitive status of the Hexian sample in comparison to contemporaneous or even earlier populations of Asia. Based on this finding, we suggest that the primitive-derived gradients of the Asian hominins cannot be satisfactorily fitted along a chronological sequence, suggesting complex evolutionary scenarios with the coexistence and/or survival of different lineages in Eurasia. Hexian could represent the persistence in time of a H. erectus group that would have retained primitive features that were lost in other Asian populations such as Zhoukoudian or Panxian Dadong. Our study expands the metrical and morphological variations known for the East Asian hominins before the mid-Middle Pleistocene and warns about the possibility that the Asian hominin variability may have been taxonomically oversimplified.

Dataset Information

Genetic history of an archaic hominin group from Denisova Cave in Siberia.

Publications

Genetic history of an archaic hominin group from Denisova Cave in Siberia.

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