Dataset Information

Objects exhibit body model like shape distortions.

ABSTRACT: Accurate knowledge about size and shape of the body derived from somatosensation is important to locate one's own body in space. The internal representation of these body metrics (body model) has been assessed by contrasting the distortions of participants' body estimates across two types of tasks (localization task vs. template matching task). Here, we examined to which extent this contrast is linked to the human body. We compared participants' shape estimates of their own hand and non-corporeal objects (rake, post-it pad, CD-box) between a localization task and a template matching task. While most items were perceived accurately in the visual template matching task, they appeared to be distorted in the localization task. All items' distortions were characterized by larger length underestimation compared to width. This pattern of distortion was maintained across orientation for the rake item only, suggesting that the biases measured on the rake were bound to an item-centric reference frame. This was previously assumed to be the case only for the hand. Although similar results can be found between non-corporeal items and the hand, the hand appears significantly more distorted than other items in the localization task. Therefore, we conclude that the magnitude of the distortions measured in the localization task is specific to the hand. Our results are in line with the idea that the localization task for the hand measures contributions of both an implicit body model that is not utilized in landmark localization with objects and other factors that are common to objects and the hand.

SUBMITTER: Saulton A

PROVIDER: S-EPMC4369293 | biostudies-literature | 2015 May

REPOSITORIES: biostudies-literature

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Objects exhibit body model like shape distortions.

Saulton Aurelie A Dodds Trevor J TJ Bülthoff Heinrich H HH de la Rosa Stephan S

Experimental brain research 20150213 5

Accurate knowledge about size and shape of the body derived from somatosensation is important to locate one's own body in space. The internal representation of these body metrics (body model) has been assessed by contrasting the distortions of participants' body estimates across two types of tasks (localization task vs. template matching task). Here, we examined to which extent this contrast is linked to the human body. We compared participants' shape estimates of their own hand and non-corporea ...[more]

PMID: 25678309

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Project description:We study a deterministic mechanistic model for the flow of ribosomes along the mRNA molecule, called the ribosome flow model with extended objects (RFMEO). This model encapsulates many realistic features of translation including non-homogeneous transition rates along mRNA, the fact that every ribosome covers several codons, and the fact that ribosomes cannot overtake one another. The RFMEO is a mean-field approximation of an important model from statistical mechanics called the totally asymmetric simple exclusion process with extended objects (TASEPEO). We demonstrate that the RFMEO describes biophysical aspects of translation better than previous mean-field approximations, and that its predictions correlate well with those of TASEPEO. However, unlike TASEPEO, the RFMEO is amenable to rigorous analysis using tools from systems and control theory. We show that the ribosome density profile along the mRNA in the RFMEO converges to a unique steady-state density that depends on the length of the mRNA, the transition rates along it, and the number of codons covered by every ribosome, but not on the initial density of ribosomes along the mRNA. In particular, the protein production rate also converges to a unique steady state. Furthermore, if the transition rates along the mRNA are periodic with a common period T then the ribosome density along the mRNA and the protein production rate converge to a unique periodic pattern with period T, that is, the model entrains to periodic excitations in the transition rates. Analysis and simulations of the RFMEO demonstrate several counterintuitive results. For example, increasing the ribosome footprint may sometimes lead to an increase in the production rate. Also, for large values of the footprint the steady-state density along the mRNA may be quite complex (e.g. with quasi-periodic patterns) even for relatively simple (and non-periodic) transition rates along the mRNA. This implies that inferring the transition rates from the ribosome density may be non-trivial. We believe that the RFMEO could be useful for modelling, understanding and re-engineering translation as well as other important biological processes.

Dataset Information

Objects exhibit body model like shape distortions.

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Objects exhibit body model like shape distortions.

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