Dataset Information

Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds.

ABSTRACT: Thoroughbred, a relatively recent horse breed, is best known for its use in horse racing. Although myostatin (MSTN) variants have been reported to be highly associated with horse racing performance, the trait is more likely to be polygenic in nature. The purpose of this study was to identify genetic variants strongly associated with racing performance by using estimated breeding value (EBV) for race time as a phenotype. We conducted a two-stage genome-wide association study to search for genetic variants associated with the EBV. In the first stage of genome-wide association study, a relatively large number of markers (~54,000 single-nucleotide polymorphisms, SNPs) were evaluated in a small number of samples (240 horses). In the second stage, a relatively small number of markers identified to have large effects (170 SNPs) were evaluated in a much larger number of samples (1,156 horses). We also validated the SNPs related to MSTN known to have large effects on racing performance and found significant associations in the stage two analysis, but not in stage one. We identified 28 significant SNPs related to 17 genes. Among these, six genes have a function related to myogenesis and five genes are involved in muscle maintenance. To our knowledge, these genes are newly reported for the genetic association with racing performance of Thoroughbreds. It complements a recent horse genome-wide association studies of racing performance that identified other SNPs and genes as the most significant variants. These results will help to expand our knowledge of the polygenic nature of racing performance in Thoroughbreds.

SUBMITTER: Shin DH

PROVIDER: S-EPMC4412973 | biostudies-literature | 2015 Jun

REPOSITORIES: biostudies-literature

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Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds.

Shin Dong-Hyun DH Lee Jin Woo JW Park Jong-Eun JE Choi Ik-Young IY Oh Hee-Seok HS Kim Hyeon Jeong HJ Kim Heebal H

Asian-Australasian journal of animal sciences 20150601 6

Thoroughbred, a relatively recent horse breed, is best known for its use in horse racing. Although myostatin (MSTN) variants have been reported to be highly associated with horse racing performance, the trait is more likely to be polygenic in nature. The purpose of this study was to identify genetic variants strongly associated with racing performance by using estimated breeding value (EBV) for race time as a phenotype. We conducted a two-stage genome-wide association study to search for genetic ...[more]

PMID: 25925054

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Project description:Maternal aging has negative influences on the development and racing performance of their offspring in racehorses. However, the mechanism by which pregnancy at old age reduces the race performance of the offspring is unknown. Here, two hypotheses were posited: 1) Foals born to older mares are more likely to have muscular, skeletal, and cognitive disadvantages (direct effects). 2) Foals born to older mares are more likely to be affected by non-physiological factors correlating with the mare's age, such as the quality of sires (e.g. low-quality sires are likely to be chosen as partners of older broodmares). To test these hypotheses, the effect of the broodmare's age on the offspring's racing performance was examined, while controlling for the effects of the stallion's quality, age, and ID, offspring's sex, trainer, and the location of the training center. Information of racehorses registered to the Japan Racing Association were collected from the Japan Bloodhorse Breeders' Association website. Overall, results showed that the racing performance of horses born from older mares was lower than that of horses born from younger mares. However, generalized linear mixed models (GLMM) indicated that the quality of sires was significantly associated with the offspring's racing performance, rather than the broodmare's age itself. Furthermore, the age of broodmares was negatively correlated with the quality of sires, although the variance inflation factor was low. Therefore, the effect of maternal aging was negligible or only limited, and rather, the sire's quality had an important influence on the offspring's racing performance. Low quality sires, or cheap stallions in other words, are likely to be chosen as partners of older blood-mares, which may have reproductive risks such as lower fertility and higher rate of miscarriages. The present study suggests that the conventional belief that racehorses born from older mares show lower performance may not always be accurate.

Dataset Information

Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds.

Publications

Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds.

Similar Datasets

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