De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing.
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ABSTRACT:
SUBMITTER: Kakumani PK
PROVIDER: S-EPMC4545970 | biostudies-literature | 2015
REPOSITORIES: biostudies-literature
Publications
De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing.
Kakumani Pavan Kumar PK Shukla Rohit R Todur Vivek N VN Malhotra Pawan P Mukherjee Sunil K SK Bhatnagar Raj K RK
Biology direct 20150820
Spodoptera is an important polyphagous agricultural insect pest in the tropical world. The genomic details are limited to understand the pest biology at molecular level. In the present study, we sequenced and assembled the transcriptome from Sf21 cells into a non redundant set of 24,038 contigs of ~ 47.38 Mb in size. A total of 26,390 unigenes were identified from the assembled transcripts and their annotation revealed the prevalent protein domains in Sf21 cells. The present study would provide ...[more]
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