Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler.
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ABSTRACT:
SUBMITTER: Bankar KG
PROVIDER: S-EPMC4583709 | biostudies-literature | 2015 Sep
REPOSITORIES: biostudies-literature
Publications
Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler.
Bankar Kiran Gopinath KG Todur Vivek Nagaraj VN Shukla Rohit Nandan RN Vasudevan Madavan M
Genomics data 20150715
Advent of Next Generation Sequencing has led to possibilities of de novo transcriptome assembly of organisms without availability of complete genome sequence. Among various sequencing platforms available, Illumina is the most widely used platform based on data quality, quantity and cost. Various de novo transcriptome assemblers are also available today for construction of de novo transcriptome. In this study, we aimed at obtaining an ameliorated de novo transcriptome assembly with sequence reads ...[more]
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