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Evaluation of endogenous control gene(s) for gene expression studies in human blood exposed to 60Co ?-rays ex vivo.

ABSTRACT: In gene expression studies, it is critical to normalize data using a stably expressed endogenous control gene in order to obtain accurate and reliable results. However, we currently do not have a universally applied endogenous control gene for normalization of data for gene expression studies, particularly those involving (60)Co ?-ray-exposed human blood samples. In this study, a comparative assessment of the gene expression of six widely used housekeeping endogenous control genes, namely 18S, ACTB, B2M, GAPDH, MT-ATP6 and CDKN1A, was undertaken for a range of (60)Co ?-ray doses (0.5, 1.0, 2.0 and 4.0 Gy) at 8.4 Gy min(-1) at 0 and 24 h post-irradiation time intervals. Using the NormFinder algorithm, real-time PCR data obtained from six individuals (three males and three females) were analyzed with respect to the threshold cycle (Ct) value and abundance, ?Ct pair-wise comparison, intra- and inter-group variability assessments, etc. GAPDH, either alone or in combination with 18S, was found to be the most suitable endogenous control gene and should be used in gene expression studies, especially those involving qPCR of ?-ray-exposed human blood samples.

SUBMITTER: Vaiphei ST

PROVIDER: S-EPMC4572586 | biostudies-literature | 2015 Jan

REPOSITORIES: biostudies-literature

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Evaluation of endogenous control gene(s) for gene expression studies in human blood exposed to 60Co γ-rays ex vivo.

Vaiphei S Thangminlal ST Keppen Joshua J Nongrum Saibadaiahun S Chaubey R C RC Kma L L Sharan R N RN

Journal of radiation research 20140930 1

In gene expression studies, it is critical to normalize data using a stably expressed endogenous control gene in order to obtain accurate and reliable results. However, we currently do not have a universally applied endogenous control gene for normalization of data for gene expression studies, particularly those involving (60)Co γ-ray-exposed human blood samples. In this study, a comparative assessment of the gene expression of six widely used housekeeping endogenous control genes, namely 18S, A ...[more]

PMID: 25271263

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Dataset Information

Evaluation of endogenous control gene(s) for gene expression studies in human blood exposed to 60Co ?-rays ex vivo.

Publications

Evaluation of endogenous control gene(s) for gene expression studies in human blood exposed to 60Co γ-rays ex vivo.

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