Dataset Information

Pervasive multinucleotide mutational events in eukaryotes.

ABSTRACT: Many aspects of mutational processes are nonrandom, from the preponderance of transitions relative to transversions to the higher rate of mutation at CpG dinucleotides [1]. However, it is still often assumed that single-nucleotide mutations are independent of one another, each being caused by separate mutational events. The occurrence of multiple, closely spaced substitutions appears to violate assumptions of independence and is often interpreted as evidence for the action of adaptive natural selection [2, 3], balancing selection [4], or compensatory evolution [5, 6]. Here we provide evidence of a frequent, widespread multinucleotide mutational process active throughout eukaryotes. Genomic data from mutation-accumulation experiments, parent-offspring trios, and human polymorphisms all show that simultaneous nucleotide substitutions occur within short stretches of DNA. Regardless of species, such multinucleotide mutations (MNMs) consistently comprise ~3% of the total number of nucleotide substitutions. These results imply that previous adaptive interpretations of multiple, closely spaced substitutions may have been unwarranted and that MNMs must be considered when interpreting sequence data.

SUBMITTER: Schrider DR

PROVIDER: S-EPMC4744473 | biostudies-literature | 2011 Jun

REPOSITORIES: biostudies-literature

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Pervasive multinucleotide mutational events in eukaryotes.

Schrider Daniel R DR Hourmozdi Jonathan N JN Hahn Matthew W MW

Current biology : CB 20110601 12

Many aspects of mutational processes are nonrandom, from the preponderance of transitions relative to transversions to the higher rate of mutation at CpG dinucleotides [1]. However, it is still often assumed that single-nucleotide mutations are independent of one another, each being caused by separate mutational events. The occurrence of multiple, closely spaced substitutions appears to violate assumptions of independence and is often interpreted as evidence for the action of adaptive natural se ...[more]

PMID: 21636278

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Project description:The degree and extent of crustal hydrothermal alteration related to the eruption of large igneous provinces is poorly known and not easily recognizable in the field. We here report a new δ18O dataset for dikes and lavas from the Columbia River Basalt Group (16-15 Ma) in the western USA, and document that dikes on average are 1-2‰ more depleted in δ18O than basalt flows. We show that this observation is best explained with the involvement of heated meteoric waters during their cooling in the crust. The largest 6-8‰ depletion is found around and inside a 10 m-thick feeder dike that intruded the 125 Ma Wallowa tonalitic batholith. This dike likely operated as a magma conduit for 4-7 years, based on the extent of heating and melting its host rocks. We show that this dike also created a hydrothermal system around its contacts extending up to 100 m into the surrounding bedrock. A model that considers (a) hydrothermal circulation around the dike, (b) magma flow and (c) oxygen isotope exchange rates, suggests that the hydrothermal system operated for ~150 years after the cessation of magma flow. In agreement with a previously published (U-Th)/He thermochronology profile, our model shows that rocks 100 m away from such a dike can be hydrothermally altered. Collectively, our sample set is the first documentation of the widespread hydrothermal alteration of the shallow crust caused by the intrusion of dikes and sills of the Columbia River Basalt Province. It is estimated that heating and hydrothermal alteration of sediments rich in organic matter and carbonates around the dikes and sills releases 18 Gt of greenhouse gases (CH4 and CO2). Furthermore, hydrothermal δ18O depletion of rocks around dikes covers 500-600 km3, which, when scaled to the total CRB province constitutes 31,000 km3 of low-δ18O rocks. These volumes of crust depleted in δ18O are sufficient to explain the abundant low-δ18O magmas in eastern Oregon and western Idaho. This work also demonstrates that the width and magnitude of δ18O depletion around dikes can identify them as feeders. Given this, we here interpret Paleoproterozoic dikes in Karelia with the world's lowest δ18O depletions (-27.8‰) as feeders to the coeval large igneous province aged 2.2-2.4 Ga that operated under the Snowball Earth glaciation conditions.

Dataset Information

Pervasive multinucleotide mutational events in eukaryotes.

Publications

Pervasive multinucleotide mutational events in eukaryotes.

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