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Corepressive interaction and clustering of degrade-and-fire oscillators.

ABSTRACT: Strongly nonlinear degrade-and-fire (DF) oscillations may emerge in genetic circuits having a delayed negative feedback loop as their core element. Here we study the synchronization of DF oscillators coupled through a common repressor field. For weak coupling, initially distinct oscillators remain desynchronized. For stronger coupling, oscillators can be forced to wait in the repressed state until the global repressor field is sufficiently degraded, and then they fire simultaneously forming a synchronized cluster. Our analytical theory provides necessary and sufficient conditions for clustering and specifies the maximum number of clusters that can be formed in the asymptotic regime. We find that in the thermodynamic limit a phase transition occurs at a certain coupling strength from the weakly clustered regime with only microscopic clusters to a strongly clustered regime where at least one giant cluster has to be present.

SUBMITTER: Fernandez B

PROVIDER: S-EPMC4813716 | biostudies-literature | 2011 Nov

REPOSITORIES: biostudies-literature

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Corepressive interaction and clustering of degrade-and-fire oscillators.

Fernandez Bastien B Tsimring Lev S LS

Physical review. E, Statistical, nonlinear, and soft matter physics 20111122 5 Pt 1

Strongly nonlinear degrade-and-fire (DF) oscillations may emerge in genetic circuits having a delayed negative feedback loop as their core element. Here we study the synchronization of DF oscillators coupled through a common repressor field. For weak coupling, initially distinct oscillators remain desynchronized. For stronger coupling, oscillators can be forced to wait in the repressed state until the global repressor field is sufficiently degraded, and then they fire simultaneously forming a sy ...[more]

PMID: 22181453

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