Ontology highlight
ABSTRACT:
SUBMITTER: Chiu TP
PROVIDER: S-EPMC4824130 | biostudies-literature | 2016 Apr
REPOSITORIES: biostudies-literature
Chiu Tsu-Pei TP Comoglio Federico F Zhou Tianyin T Yang Lin L Paro Renato R Rohs Remo R
Bioinformatics (Oxford, England) 20151214 8
<h4>Unlabelled</h4>DNAshapeR predicts DNA shape features in an ultra-fast, high-throughput manner from genomic sequencing data. The package takes either nucleotide sequence or genomic coordinates as input and generates various graphical representations for visualization and further analysis. DNAshapeR further encodes DNA sequence and shape features as user-defined combinations of k-mer and DNA shape features. The resulting feature matrices can be readily used as input of various machine learning ...[more]