Dataset Information

Latitudinal Clines of the Human Vitamin D Receptor and Skin Color Genes.

ABSTRACT: The well-documented latitudinal clines of genes affecting human skin color presumably arise from the need for protection from intense ultraviolet radiation (UVR) vs. the need to use UVR for vitamin D synthesis. Sampling 751 subjects from a broad range of latitudes and skin colors, we investigated possible multilocus correlated adaptation of skin color genes with the vitamin D receptor gene (VDR), using a vector correlation metric and network method called BlocBuster. We discovered two multilocus networks involving VDR promoter and skin color genes that display strong latitudinal clines as multilocus networks, even though many of their single gene components do not. Considered one by one, the VDR components of these networks show diverse patterns: no cline, a weak declining latitudinal cline outside of Africa, and a strong in- vs. out-of-Africa frequency pattern. We confirmed these results with independent data from HapMap. Standard linkage disequilibrium analyses did not detect these networks. We applied BlocBuster across the entire genome, showing that our networks are significant outliers for interchromosomal disequilibrium that overlap with environmental variation relevant to the genes' functions. These results suggest that these multilocus correlations most likely arose from a combination of parallel selective responses to a common environmental variable and coadaptation, given the known Mendelian epistasis among VDR and the skin color genes.

SUBMITTER: Tiosano D

PROVIDER: S-EPMC4856077 | biostudies-literature | 2016 May

REPOSITORIES: biostudies-literature

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Publications

Latitudinal Clines of the Human Vitamin D Receptor and Skin Color Genes.

Tiosano Dov D Audi Laura L Climer Sharlee S Zhang Weixiong W Templeton Alan R AR Fernández-Cancio Monica M Gershoni-Baruch Ruth R Sánchez-Muro José Miguel JM El Kholy Mohamed M Hochberg Zèev Z

G3 (Bethesda, Md.) 20160503 5

The well-documented latitudinal clines of genes affecting human skin color presumably arise from the need for protection from intense ultraviolet radiation (UVR) vs. the need to use UVR for vitamin D synthesis. Sampling 751 subjects from a broad range of latitudes and skin colors, we investigated possible multilocus correlated adaptation of skin color genes with the vitamin D receptor gene (VDR), using a vector correlation metric and network method called BlocBuster. We discovered two multilocus ...[more]

PMID: 26921301

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Project description:Within an animal species, the body sizes of individuals at higher latitudes are often different from individuals at lower latitudes. For homeothermic species that maintain a relatively constant body temperature, such as mammals and birds, individuals at higher latitudes tend to be larger. For ectothermic species, such as insects, that do not retain their own body heat and which often do not maintain a relatively constant body temperature, patterns of body size with latitude are highly variable. This has led some authors to contend that patterns in even closely related species cannot be expected to be similar. Indeed, to our knowledge, no studies of invertebrates have found that more closely related species have more similar relationships between body size and latitude. Further, no studies have investigated the potential influence of diet quality on interspecific differences in these clines. We measured wing lengths of specimens (N = 1753) in eight lycaenid butterfly species and one species of the sister family, Riodinidae to determine if more closely related species have similar latitudinal trends. We also estimated the mean nitrogen content of caterpillars' hosts to investigate whether this often-limiting nutrient influences the strength and direction of latitudinal clines in body size. We found that four species are significantly smaller at higher latitudes, an additional species is marginally smaller at higher latitudes (p < .06), and four species had no significant relationship with latitude. We also found a strong phylogenetic signal for latitudinal clines in body size among our species, which indicates that some closely related species may have similar clines. However, the strength and direction of these clines did not depend on the estimated nitrogen content of caterpillars' hosts. Our results indicate that mean nitrogen content of hosts may not be an important driver in latitudinal clines but that phylogenetic relationships among species should be accounted for when exploring other potential drivers of body-size clines in invertebrate species.

Dataset Information

Latitudinal Clines of the Human Vitamin D Receptor and Skin Color Genes.

Publications

Latitudinal Clines of the Human Vitamin D Receptor and Skin Color Genes.

Similar Datasets

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