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Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors.

ABSTRACT: Enzymatic effectors targeting nucleic acids, proteins and other cellular components are the mainstay of conflicts across life forms. Using comparative genomics we identify a large class of eukaryotic proteins, which include effectors from oomycetes, fungi and other parasites. The majority of these proteins have a characteristic domain architecture with one of several N-terminal 'Header' domains, which are predicted to play a role in trafficking of these effectors, including a novel version of the Ubiquitin fold. The Headers are followed by one or more diverse C-terminal domains, such as restriction endonuclease (REase), protein kinase, HNH endonuclease, LK-nuclease (a RNase) and multiple distinct peptidase domains, which are predicted to carry their toxicity determinants. The most common types of these proteins appear to have originated from prokaryotic transposases (e.g. TN7 and Mu) and combine a CDC6/ORC1-STAND clade NTPase domain with a C-terminal REase domain. Other than the so-called Crinkler effectors of oomycetes and fungi, these effectors are encoded by other eukaryotic parasites such as trypanosomatids (the RHS proteins) and the rhizarian Plasmodiophora, and symbionts like Capsaspora Remarkably, we also find these proteins in free-living eukaryotes, including several viridiplantae, fungi, amoebozoans and animals. These versions might either still be transposons or function in other poorly understood eukaryote-specific inter-organismal and inter-genomic conflicts. These include the Medea1 selfish element of Tribolium that spreads via post-zygotic killing. We present a unified mechanism for the recombination-dependent diversification and action of this widespread class of molecular weaponry deployed across diverse conflicts ranging from parasitic to free-living forms.

SUBMITTER: Zhang D

PROVIDER: S-EPMC4857004 | biostudies-literature | 2016 May

REPOSITORIES: biostudies-literature

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Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors.

Zhang Dapeng D Burroughs A Maxwell AM Vidal Newton D ND Iyer Lakshminarayan M LM Aravind L L

Nucleic acids research 20160408 8

Enzymatic effectors targeting nucleic acids, proteins and other cellular components are the mainstay of conflicts across life forms. Using comparative genomics we identify a large class of eukaryotic proteins, which include effectors from oomycetes, fungi and other parasites. The majority of these proteins have a characteristic domain architecture with one of several N-terminal 'Header' domains, which are predicted to play a role in trafficking of these effectors, including a novel version of th ...[more]

PMID: 27060143

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Project description:?-Scorpion toxins constitute a family of peptide modulators that induce a prolongation of the action potential of excitable cells by inhibiting voltage-gated sodium channel inactivation. Although they all adopt a conserved structural scaffold, the potency and phylogentic preference of these toxins largely vary, which render them an intriguing model for studying evolutionary diversification among family members. Here, we report molecular characterization of a new multigene family of ?-toxins comprising 13 members (named MeuNaTx?-1 to MeuNaTx?-13) from the scorpion Mesobuthus eupeus. Of them, five native toxins (MeuNaTx?-1 to -5) were purified to homogeneity from the venom and the solution structure of MeuNaTx?-5 was solved by nuclear magnetic resonance. A systematic functional evaluation of MeuNaTx?-1, -2, -4, and -5 was conducted by two-electrode voltage-clamp recordings on seven cloned mammalian voltage-gated sodium channels (Na(v)1.2 to Na(v)1.8) and the insect counterpart DmNa(v)1 expressed in Xenopus oocytes. Results show that all these four peptides slow inactivation of DmNa(v)1 and are inactive on Na(v)1.8 at micromolar concentrations. However, they exhibit differential specificity for the other six channel isoforms (Na(v)1.2 to Na(v)1.7), in which MeuNaTx?-4 shows no activity on these isoforms and thus represents the first Mesobuthus-derived insect-selective ?-toxin identified so far with a half maximal effective concentration of 130 ± 2 nm on DmNa(v)1 and a half maximal lethal dose of about 200 pmol g(-1) on the insect Musca domestica; MeuNaTx?-2 only affects Na(v)1.4; MeuNaTx?-1 and MeuNaTx?-5 have a wider range of channel spectrum, the former active on Na(v)1.2, Na(v)1.3, Na(v)1.6, and Na(v)1.7, whereas the latter acting on Na(v)1.3-Na(v)1.7. Remarkably, MeuNaTx?-4 and MeuNaTx?-5 are two nearly identical peptides differing by only one point mutation at site 50 (A50V) but exhibit rather different channel subtype selectivity, highlighting a switch role of this site in altering the target specificity. By the maximum likelihood models of codon substitution, we detected nine positively selected sites (PSSs) that could be involved in functional diversification of Mesobuthus ?-toxins. The PSSs include site 50 and other seven sites located in functional surfaces of ?-toxins. This work represents the first thorough investigation of evolutionary diversification of ?-toxins derived from a specific scorpion lineage from the perspectives of sequence, structure, function, and evolution.

Dataset Information

Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors.

Publications

Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors.

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