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Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells.

ABSTRACT: The specific interactions between RNA-binding proteins and their target RNAs are an essential level to control gene expression. By combining ultra-violet cross-linking and immunoprecipitation (CLIP) and massive SoliD sequencing we identified the RNAs bound by the RNA-binding protein CELF1, in human HeLa cells. The CELF1 binding sites deduced from the sequence data allow characterizing specific features of CELF1-RNA association. We present therefore the first map of CELF1 binding sites in human cells.

SUBMITTER: Le Tonqueze O

PROVIDER: S-EPMC4872370 | biostudies-literature | 2016 Jun

REPOSITORIES: biostudies-literature

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Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells.

Le Tonquèze Olivier O Gschloessl Bernhard B Legagneux Vincent V Paillard Luc L Audic Yann Y

Genomics data 20160419

The specific interactions between RNA-binding proteins and their target RNAs are an essential level to control gene expression. By combining ultra-violet cross-linking and immunoprecipitation (CLIP) and massive SoliD sequencing we identified the RNAs bound by the RNA-binding protein CELF1, in human HeLa cells. The CELF1 binding sites deduced from the sequence data allow characterizing specific features of CELF1-RNA association. We present therefore the first map of CELF1 binding sites in human c ...[more]

PMID: 27222809

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