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Genes with monoallelic expression contribute disproportionately to genetic diversity in humans.

ABSTRACT: An unexpectedly large number of human autosomal genes are subject to monoallelic expression (MAE). Our analysis of 4,227 such genes uncovers surprisingly high genetic variation across human populations. This increased diversity is unlikely to reflect relaxed purifying selection. Remarkably, MAE genes exhibit an elevated recombination rate and an increased density of hypermutable sequence contexts. However, these factors do not fully account for the increased diversity. We find that the elevated nucleotide diversity of MAE genes is also associated with greater allelic age: variants in these genes tend to be older and are enriched in polymorphisms shared by Neanderthals and chimpanzees. Both synonymous and nonsynonymous alleles of MAE genes have elevated average population frequencies. We also observed strong enrichment of the MAE signature among genes reported to evolve under balancing selection. We propose that an important biological function of widespread MAE might be the generation of cell-to-cell heterogeneity; the increased genetic variation contributes to this heterogeneity.

SUBMITTER: Savova V

PROVIDER: S-EPMC4942303 | biostudies-literature | 2016 Mar

REPOSITORIES: biostudies-literature

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Genes with monoallelic expression contribute disproportionately to genetic diversity in humans.

Savova Virginia V Chun Sung S Sohail Mashaal M McCole Ruth B RB Witwicki Robert R Gai Lisa L Lenz Tobias L TL Wu C-Ting CT Sunyaev Shamil R SR Gimelbrant Alexander A AA

Nature genetics 20160125 3

An unexpectedly large number of human autosomal genes are subject to monoallelic expression (MAE). Our analysis of 4,227 such genes uncovers surprisingly high genetic variation across human populations. This increased diversity is unlikely to reflect relaxed purifying selection. Remarkably, MAE genes exhibit an elevated recombination rate and an increased density of hypermutable sequence contexts. However, these factors do not fully account for the increased diversity. We find that the elevated ...[more]

PMID: 26808112

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Genes with monoallelic expression contribute disproportionately to genetic diversity in humans.

Publications

Genes with monoallelic expression contribute disproportionately to genetic diversity in humans.

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