MOCAT2: a metagenomic assembly, annotation and profiling framework.
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ABSTRACT: Unlabelled
MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes.Availability and implementation
MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.deContact
: bork@embl.deSupplementary information
Supplementary data are available at Bioinformatics online.
SUBMITTER: Kultima JR
PROVIDER: S-EPMC4978931 | biostudies-literature | 2016 Aug
REPOSITORIES: biostudies-literature
Publications
MOCAT2: a metagenomic assembly, annotation and profiling framework.
Kultima Jens Roat JR Coelho Luis Pedro LP Forslund Kristoffer K Huerta-Cepas Jaime J Li Simone S SS Driessen Marja M Voigt Anita Yvonne AY Zeller Georg G Sunagawa Shinichi S Bork Peer P
Bioinformatics (Oxford, England) 20160408 16
<h4>Unlabelled</h4>MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes.<h4>Availability and implementation</h4>MOCAT2 is implemented in Pe ...[more]
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| PRJEB22501 | ENA