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Functional annotation of noncoding sequence variants.


ABSTRACT: Identifying functionally relevant variants against the background of ubiquitous genetic variation is a major challenge in human genetics. For variants in protein-coding regions, our understanding of the genetic code and splicing allows us to identify likely candidates, but interpreting variants outside genic regions is more difficult. Here we present genome-wide annotation of variants (GWAVA), a tool that supports prioritization of noncoding variants by integrating various genomic and epigenomic annotations.

SUBMITTER: Ritchie GR 

PROVIDER: S-EPMC5015703 | biostudies-literature | 2014 Mar

REPOSITORIES: biostudies-literature

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Functional annotation of noncoding sequence variants.

Ritchie Graham R S GR   Dunham Ian I   Zeggini Eleftheria E   Flicek Paul P  

Nature methods 20140202 3


Identifying functionally relevant variants against the background of ubiquitous genetic variation is a major challenge in human genetics. For variants in protein-coding regions, our understanding of the genetic code and splicing allows us to identify likely candidates, but interpreting variants outside genic regions is more difficult. Here we present genome-wide annotation of variants (GWAVA), a tool that supports prioritization of noncoding variants by integrating various genomic and epigenomic  ...[more]

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