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Novel mutations in LRP6 highlight the role of WNT signaling in tooth agenesis.


ABSTRACT: We aimed to identify a novel genetic cause of tooth agenesis (TA) and/or orofacial clefting (OFC) by combining whole-exome sequencing (WES) and targeted resequencing in a large cohort of TA and OFC patients.WES was performed in two unrelated patients: one with severe TA and OFC and another with severe TA only. After deleterious mutations were identified in a gene encoding low-density lipoprotein receptor-related protein 6 (LRP6), all its exons were resequenced with molecular inversion probes in 67 patients with TA, 1,072 patients with OFC, and 706 controls.We identified a frameshift (c.4594delG, p.Cys1532fs) and a canonical splice-site mutation (c.3398-2A>C, p.?) in LRP6, respectively, in the patient with TA and OFC and in the patient with severe TA only. The targeted resequencing showed significant enrichment of unique LRP6 variants in TA patients but not in nonsyndromic OFC patients. Of the five variants in patients with TA, two affected the canonical splice site and three were missense variants; all variants segregated with the dominant phenotype, and in one case the missense mutation occurred de novo.Mutations in LRP6 cause TA in humans.Genet Med 18 11, 1158-1162.

SUBMITTER: Ockeloen CW 

PROVIDER: S-EPMC5018235 | biostudies-literature | 2016 Nov

REPOSITORIES: biostudies-literature

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Novel mutations in LRP6 highlight the role of WNT signaling in tooth agenesis.

Ockeloen Charlotte W CW   Khandelwal Kriti D KD   Dreesen Karoline K   Ludwig Kerstin U KU   Sullivan Robert R   van Rooij Iris A L M IALM   Thonissen Michelle M   Swinnen Steven S   Phan Milien M   Conte Federica F   Ishorst Nina N   Gilissen Christian C   RoaFuentes Laury L   van de Vorst Maartje M   Henkes Arjen A   Steehouwer Marloes M   van Beusekom Ellen E   Bloemen Marjon M   Vankeirsbilck Bruno B   Bergé Stefaan S   Hens Greet G   Schoenaers Joseph J   Poorten Vincent Vander VV   Roosenboom Jasmien J   Verdonck An A   Devriendt Koen K   Roeleveldt Nel N   Jhangiani Shalini N SN   Vissers Lisenka E L M LELM   Lupski James R JR   de Ligt Joep J   Von den Hoff Johannes W JW   Pfundt Rolph R   Brunner Han G HG   Zhou Huiqing H   Dixon Jill J   Mangold Elisabeth E   van Bokhoven Hans H   Dixon Michael J MJ   Kleefstra Tjitske T   Hoischen Alexander A   Carels Carine E L CEL  

Genetics in medicine : official journal of the American College of Medical Genetics 20160310 11


<h4>Purpose</h4>We aimed to identify a novel genetic cause of tooth agenesis (TA) and/or orofacial clefting (OFC) by combining whole-exome sequencing (WES) and targeted resequencing in a large cohort of TA and OFC patients.<h4>Methods</h4>WES was performed in two unrelated patients: one with severe TA and OFC and another with severe TA only. After deleterious mutations were identified in a gene encoding low-density lipoprotein receptor-related protein 6 (LRP6), all its exons were resequenced wit  ...[more]

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