Rapid Determination of Fast Protein Dynamics from NMR Chemical Exchange Saturation Transfer Data.

ABSTRACT: Functional motions of (15)N-labeled proteins can be monitored by solution NMR spin relaxation experiments over a broad range of timescales. These experiments however typically take of the order of several days to a week per protein. Recently, NMR chemical exchange saturation transfer (CEST) experiments have emerged to probe slow millisecond motions complementing R1? and CPMG-type experiments. CEST also simultaneously reports on site-specific R1 and R2 parameters. It is shown here how CEST-derived R1 and R2 relaxation parameters can be measured within a few hours at an accuracy comparable to traditional relaxation experiments. Using a "lean" version of the model-free approach S(2) order parameters can be determined that match those from the standard model-free approach applied to (15)N R1, R2 , and {(1)H}-(15)N NOE data. The new methodology, which is demonstrated for ubiquitin and arginine kinase (42?kDa), should serve as an effective screening tool of protein dynamics from picosecond-to-millisecond timescales.

SUBMITTER: Gu Y 

PROVIDER: S-EPMC5035698 | biostudies-literature | 2016 Feb

REPOSITORIES: biostudies-literature