First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations.
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ABSTRACT:
SUBMITTER: Kumar V
PROVIDER: S-EPMC5066660 | biostudies-literature | 2016 Aug
REPOSITORIES: biostudies-literature
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First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations.
Kumar Vinay V Khan Aamir W AW Saxena Rachit K RK Garg Vanika V Varshney Rajeev K RK
Plant biotechnology journal 20160129 8
Whole genome re-sequencing (WGRS) was conducted on a panel of 20 Cajanus spp. accessions (crossing parentals of recombinant inbred lines, introgression lines, multiparent advanced generation intercross and nested association mapping population) comprising of two wild species and 18 cultivated species accessions. A total of 791.77 million paired-end reads were generated with an effective mapping depth of ~12X per accession. Analysis of WGRS data provided 5 465 676 genome-wide variations including ...[more]
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