Dataset Information

Mining Centuries Old In situ Conserved Turkish Wheat Landraces for Grain Yield and Stripe Rust Resistance Genes.

ABSTRACT: Wheat landraces in Turkey are an important genetic resource for wheat improvement. An exhaustive 5-year (2009-2014) effort made by the International Winter Wheat Improvement Programme (IWWIP), a cooperative program between the Ministry of Food, Agriculture and Livestock of Turkey, the International Center for Maize and Wheat Improvement (CIMMYT) and the International Center for Agricultural Research in the Dry Areas (ICARDA), led to the collection and documentation of around 2000 landrace populations from 55 provinces throughout Turkey. This study reports the genetic characterization of a subset of bread wheat landraces collected in 2010 from 11 diverse provinces using genotyping-by-sequencing (GBS) technology. The potential of this collection to identify loci determining grain yield and stripe rust resistance via genome-wide association (GWA) analysis was explored. A high genetic diversity (diversity index = 0.260) and a moderate population structure based on highly inherited spike traits was revealed in the panel. The linkage disequilibrium decayed at 10 cM across the whole genome and was slower as compared to other landrace collections. In addition to previously reported QTL, GWA analysis also identified new candidate genomic regions for stripe rust resistance, grain yield, and spike productivity components. New candidate genomic regions reflect the potential of this landrace collection to further increase genetic diversity in elite germplasm.

SUBMITTER: Sehgal D

PROVIDER: S-EPMC5114521 | biostudies-literature | 2016

REPOSITORIES: biostudies-literature

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Mining Centuries Old <i>In situ</i> Conserved Turkish Wheat Landraces for Grain Yield and Stripe Rust Resistance Genes.

Sehgal Deepmala D Dreisigacker Susanne S Belen Savaş S Küçüközdemir Ümran Ü Mert Zafer Z Özer Emel E Morgounov Alexey A

Frontiers in genetics 20161118

Wheat landraces in Turkey are an important genetic resource for wheat improvement. An exhaustive 5-year (2009-2014) effort made by the International Winter Wheat Improvement Programme (IWWIP), a cooperative program between the Ministry of Food, Agriculture and Livestock of Turkey, the International Center for Maize and Wheat Improvement (CIMMYT) and the International Center for Agricultural Research in the Dry Areas (ICARDA), led to the collection and documentation of around 2000 landrace popula ...[more]

PMID: 27917192

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Project description:BACKGROUND:Stripe rust is a serious fungal disease of wheat (Triticum aestivum L.) caused by Puccinia striiformis f. sp. tritici (Pst), which results in yield reduction and decreased grain quality. Breeding for genetic resistance to stripe rust is the most cost-effective method to control the disease. In the present study, a genome-wide association study (GWAS) was conducted to identify markers linked to stripe rust resistance genes (or loci) in 93 Northern Chinese wheat landraces, using Diversity Arrays Technology (DArT) and simple sequence repeat (SSR) molecular marker technology based on phenotypic data from two field locations over two growing seasons in China. RESULTS:Seventeen accessions were verified to display stable and high levels of adult plant resistance (APR) to stripe rust via multi-environment field assessments. Significant correlations among environments and high heritability were observed for stripe rust infection type (IT) and disease severity (DS). Using mixed linear models (MLM) for the GWAS, a total of 32 significantly associated loci (P < 0.001) were detected. In combination with the linkage disequilibrium (LD) decay distance (6.4 cM), 25 quantitative trait loci (QTL) were identified. Based on the integrated map of previously reported genes and QTL, six QTL located on chromosomes 4A, 6A and 7D were mapped far from resistance regions identified previously, and represent potentially novel stripe rust resistance loci at the adult plant stage. CONCLUSIONS:The present findings demonstrated that identification of genes or loci linked to significant markers in wheat by GWAS is feasible. Seventeen elite accessions conferred with stable and high resistance to stripe rust, and six putative newly detected APR loci were identified among the 93 Northern Chinese wheat landraces. The results illustrate the potential for acceleration of molecular breeding of wheat, and also provide novel sources of stripe rust resistance with potential utility in the breeding of improved wheat cultivars.

Project description:Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is an airborne fungal disease which always destructs leaf and leads to stagnation of grain filling, decreasing of kernel weight, thin seed and yield loss. Winter wheat Huixianhong is a special germplasm with special characteristics of tolerance or resistance against stripe rust. In order to understand the effect on Huixianhong from stripe rust, we designed two kinds of treatment, inoculation of stripe rust fungi (IH) and artificial immune by bactericide (CK) to study the dynamic of disease process, the grain filling and the thousand-kernel weight (TKW). Our results showed that the incubation period of Hongxinahui was 13.5 days. The prevalence increased from 32.9% at 15 days after jointing to 80.0% at 9 days after booting, and reached to 97.0% at the heading stage. The infection type (IT) was 7 to 9 at the beginning of anthesis. The severity, leaf withered area ratio and disease index at the 15th day after anthesis were 67.17%, 98.17% and 0.6717, respectively. The IH maximum increasing rate of leaf necrosis and chlorosis area was from heading beginning stage to anthesis beginning stage, which increased from 18.66 mm2·d-1 to 21.04 mm2·d-1. The maximum rate of grain filling was 1.25 mg·d-1 at the 18th day after anthesis, which was earlier than that of CK by 3.3 days. The IH thousand-kernel weight Loss (TKWL) was more than that of CK by 6.19%, the stage of heading and amature were 3.0 days and 4.5 days earlier than CK, respectively. The stripe rust infection seriously destructed the photosynthetic function of leaf at the earlier stage of grain filling, i.e. at the beginning of anthesis, which led to the most important biomass loss and the grain filling rate decrease. As far as stripe rust is concerned, Huixianhong is a high susceptible, easily been infected, seriously showing symptoms and most quickly epidemic type but can successfully complete grain filling in high quality. It is a very useful germplasm for creating and selecting special breeding materials against stripe rust.

Project description:The study was conducted to determine the effects of genotype (G), environment (E), their interaction (GEI) and genetic gain on yield and grain quality traits in Turkish spring wheat cultivars released between 1964 and 2010. We conducted a multi-environment trial at three testing locations: Adana, Adapazarı, and Izmir, during the 2009, 2011 and 2013 cropping seasons and tested 35 cultivars released by the respective breeding programs. Allelic variations of high and low molecular weight glutenin subunits (HMW-GS and LMW-GS) and 1B/1R translocation was also determined and evaluated in all cultivars. Comparing yield across three locations, Adana (6416 kg ha-1) yield was relatively higher than in Izmir (5887 kg ha-1) and Adapazarı (5205 kg ha-1) (P<0.001). Overall, GY was influenced by the varieties, testing location and breeding programs (P<0.001). Cultivars from Izmir breeding program performed relatively better (6174 kg ha-1) than those from Adana (5996 kg ha-1) and Adapazarı (5351 kg ha-1) (<0.001). We recommend Ziyabey-98, Menemen, and Basribey-95, for stable grain yield in spring wheat production across the studied regions because of their wide adaptability, and Pamukova-97 for future breeding to improve grain quality parameters. We found three breeding programs have successfully increased the grain yield and quality traits for 46 years. As a group, cultivars released after 2000 had the highest yield indicating breeding progress. Genetic gain for GY was 30.9 kg ha-1 per year from 1964 with annual increase compared to the yield of older cultivar Akova B-2 (4102 kg ha-1) which constitutes a 0.75% rate of genetic gain. Improvement in grain quality was related to change in protein composition rather than an increase in protein content whereas yield improvement seems to mainly be related to increases in test weight and 1000 kernel weight. High molecular weight glutenin subunit (HMW-GS) 5+10 showed an increase in frequency whereas 2+12 showed a decrease over the breeding period.

Dataset Information

Mining Centuries Old In situ Conserved Turkish Wheat Landraces for Grain Yield and Stripe Rust Resistance Genes.

Publications

Mining Centuries Old <i>In situ</i> Conserved Turkish Wheat Landraces for Grain Yield and Stripe Rust Resistance Genes.

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