Dataset Information

A Biomechanical Modeling Guided CBCT Estimation Technique.

ABSTRACT: Two-dimensional-to-three-dimensional (2D-3D) deformation has emerged as a new technique to estimate cone-beam computed tomography (CBCT) images. The technique is based on deforming a prior high-quality 3D CT/CBCT image to form a new CBCT image, guided by limited-view 2D projections. The accuracy of this intensity-based technique, however, is often limited in low-contrast image regions with subtle intensity differences. The solved deformation vector fields (DVFs) can also be biomechanically unrealistic. To address these problems, we have developed a biomechanical modeling guided CBCT estimation technique (Bio-CBCT-est) by combining 2D-3D deformation with finite element analysis (FEA)-based biomechanical modeling of anatomical structures. Specifically, Bio-CBCT-est first extracts the 2D-3D deformation-generated displacement vectors at the high-contrast anatomical structure boundaries. The extracted surface deformation fields are subsequently used as the boundary conditions to drive structure-based FEA to correct and fine-tune the overall deformation fields, especially those at low-contrast regions within the structure. The resulting FEA-corrected deformation fields are then fed back into 2D-3D deformation to form an iterative loop, combining the benefits of intensity-based deformation and biomechanical modeling for CBCT estimation. Using eleven lung cancer patient cases, the accuracy of the Bio-CBCT-est technique has been compared to that of the 2D-3D deformation technique and the traditional CBCT reconstruction techniques. The accuracy was evaluated in the image domain, and also in the DVF domain through clinician-tracked lung landmarks.

SUBMITTER: Zhang Y

PROVIDER: S-EPMC5381525 | biostudies-literature | 2017 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

A Biomechanical Modeling Guided CBCT Estimation Technique.

Zhang You Y Tehrani Joubin Nasehi JN Wang Jing J

IEEE transactions on medical imaging 20161101 2

Two-dimensional-to-three-dimensional (2D-3D) deformation has emerged as a new technique to estimate cone-beam computed tomography (CBCT) images. The technique is based on deforming a prior high-quality 3D CT/CBCT image to form a new CBCT image, guided by limited-view 2D projections. The accuracy of this intensity-based technique, however, is often limited in low-contrast image regions with subtle intensity differences. The solved deformation vector fields (DVFs) can also be biomechanically unrea ...[more]

PMID: 27831866

Similar Datasets

Project description:Four-dimensional CBCT (4D-CBCT) imaging in the treatment room can provide verification of moving targets, facilitating the potential for margin reduction and consequent dose escalation. Reconstruction of 4D-CBCT images requires correlation of respiratory phase with projection acquisition, which is often achieved with external surrogate measures of respiration. However, external measures may not be a direct representation of the motion of the internal anatomy and it is therefore the aim of this work to develop a novel technique for markerless, self-sorted 4D-CBCT reconstruction.A novel 4D-CBCT reconstruction technique based on the principles of Fourier transform (FT) theory was investigated for markerless extraction of respiratory phase directly from projection data. In this FT technique, both phase information (FT-phase) and magnitude information (FT-magnitude) were separately implemented in order to discern projections corresponding to peak inspiration, which then facilitated the proceeding sort and bin processes involved in retrospective 4D image reconstruction. In order to quantitatively evaluate the accuracy of the Fourier methods, peak-inspiration projections identified each by FT-phase and FT-magnitude were compared to those manually identified by visual tracking of structures. The average phase difference as assigned by each method vs the manual technique was calculated per projection dataset. The percentage of projections that were assigned within 10% phase of each other was also computed. Both Fourier methods were tested on two phantom datasets, programmed to exhibit sinusoidal respiratory cycles of 2.0 cm in amplitude with respiratory cycle lengths of 3 and 6 s, respectively. Additionally, three sets of patient projections were studied. All of the data were previously acquired at slow-gantry speeds ranging between 0.6°/s and 0.7°/s over a 200° rotation. Ten phase bins with 10% phase windows were selected for 4D-CBCT reconstruction of one phantom and one patient case for visual and quantitative comparison. Line profiles were plotted for the 0% and 50% phase images as reconstructed by the manual technique and each of the Fourier methods.As compared with the manual technique, the FT-phase method resulted in average phase differences of 1.8% for the phantom with the 3 s respiratory cycle, 3.9% for the phantom with the 6 s respiratory cycle, 2.9% for patient 1, 5.0% for patient 2, and 3.8% for patient 3. For the FT-magnitude method, these numbers were 2.1%, 4.0%, 2.9%, 5.3%, and 3.5%, respectively. The percentage of projections that were assigned within 10% phase by the FT-phase method as compared to the manual technique for the five datasets were 100.0%, 100.0%, 97.6%, 93.4%, and 94.1%, respectively, whereas for the FT-magnitude method these percentages were 98.1%, 92.3%, 98.7%, 87.3%, and 95.7%. Reconstructed 4D phase images for both the phantom and patient case were visually and quantitatively equivalent between each of the Fourier methods vs the manual technique.A novel technique employing the basics of Fourier transform theory was investigated and demonstrated to be feasible in achieving markerless, self-sorted 4D-CBCT reconstruction.

Project description:Multi-modality image-guided radiotherapy is the standard of care in contemporary cancer management; however, it is not common in preclinical settings due to both hardware and software limitations. Soft tissue lesions, such as orthotopic prostate tumors, are difficult to identify using cone beam computed tomography (CBCT) imaging alone. In this study, we characterized a research magnetic resonance (MR) scanner for preclinical studies and created a protocol for combined MR-CBCT image-guided small animal radiotherapy. Two in-house dual-modality, MR and CBCT compatible, phantoms were designed and manufactured using 3D printing technology. The phantoms were used for quality assurance tests and to facilitate end-to-end testing for combined preclinical MR and CBCT based treatment planning. MR and CBCT images of the phantoms were acquired utilizing a Varian 4.7 T scanner and XRad-225Cx irradiator, respectively. The geometry distortion was assessed by comparing MR images to phantom blueprints and CBCT. The corrected MR scans were co-registered with CBCT and subsequently used for treatment planning. The fidelity of 3D printed phantoms compared to the blueprint design yielded favorable agreement as verified with the CBCT measurements. The geometric distortion, which varied between -5% and 11% throughout the scanning volume, was substantially reduced to within 0.4% after correction. The distortion free MR images were co-registered with the corresponding CBCT images and imported into a commercial treatment planning software SmART Plan. The planning target volume (PTV) was on average 19% smaller when contoured on the corrected MR-CBCT images relative to raw images without distortion correction. An MR-CBCT based preclinical workflow was successfully designed and implemented for small animal radiotherapy. Combined MR-CBCT image-guided radiotherapy for preclinical research potentially delivers enhanced relevance to human radiotherapy for various disease sites. This novel protocol is wide-ranging and not limited to the orthotopic prostate tumor study presented in the study.

Project description:Purpose: Conventional iterative low-dose CBCT reconstruction techniques are slow and tend to over-smooth edges through uniform weighting of the image penalty gradient. In this study, we present a non-iterative analytical low-dose CBCT reconstruction technique by restoring the noisy low-dose CBCT projection with the non-local total variation (NLTV) method. Methods: We modeled the low-dose CBCT reconstruction as recovering high quality, high-dose CBCT x-ray projections (100 kVp, 1.6 mAs) from low-dose, noisy CBCT x-ray projections (100 kVp, 0.1 mAs). The restoration of CBCT projections was performed using the NLTV regularization method. In NLTV, the x-ray image is optimized by minimizing an energy function that penalizes gray-level difference between pair of pixels between noisy x-ray projection and denoising x-ray projection. After the noisy projection is restored by NLTV regularization, the standard FDK method was applied to generate the final reconstruction output. Results: Significant noise reduction was achieved comparing to original, noisy inputs while maintaining the image quality comparable to the high-dose CBCT projections. The experimental validations show the proposed NLTV algorithm can robustly restore the noise level of x-ray projection images while significantly improving the overall image quality. The improvement in normalized mean square error (NMSE) and peak signal-to-noise ratio (PSNR) measured from the non-local total variation-gradient projection (NLTV-GPSR) algorithm is noticeable compared to that of uncorrected low-dose CBCT images. Moreover, the difference of CNRs from the gains from the proposed algorithm is noticeable and comparable to high-dose CBCT. Conclusion: The proposed method successfully restores noise degraded, low-dose CBCT projections to high-dose projection quality. Such an outcome is a considerable improvement to the reconstruction result compared to the FDK-based method. In addition, a significant reduction in reconstruction time makes the proposed algorithm more attractive. This demonstrates the potential use of the proposed algorithm for clinical practice in radiotherapy.

Dataset Information

A Biomechanical Modeling Guided CBCT Estimation Technique.

Publications

A Biomechanical Modeling Guided CBCT Estimation Technique.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure