Browse
Submit Data
Databases
API
Help

Dataset Information

21 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Lactobacillus rhamnosus BFE5264, Isolated from Maasai Traditional Fermented Milk.

ABSTRACT: Here, we report the complete genome of Lactobacillus rhamnosus BFE5264, which was sequenced with the Pacific Biosciences RSII platform. The genome size is 3.01 Mb and includes 3,077 annotated coding sequences, including genes associated with the promotion of intestinal epithelial homeostasis through specific signaling pathways.

SUBMITTER: Choi SH

PROVIDER: S-EPMC5502853 | biostudies-literature | 2017 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of <i>Lactobacillus rhamnosus</i> BFE5264, Isolated from Maasai Traditional Fermented Milk.

Choi Sang-Haeng SH Ji Yosep Y Park Soyoung S Mathara Julius J Holzapfel Wilhelm W Kang Jihee J

Genome announcements 20170706 27

Here, we report the complete genome of <i>Lactobacillus rhamnosus</i> BFE5264, which was sequenced with the Pacific Biosciences RSII platform. The genome size is 3.01 Mb and includes 3,077 annotated coding sequences, including genes associated with the promotion of intestinal epithelial homeostasis through specific signaling pathways. ...[more]

PMID: 28684572

Similar Datasets

Draft Genome Sequence of Lactobacillus plantarum BFE 5092 Isolated from Maasai Fermented Milk.

Project description:The draft genome of Lactobacillus plantarum BFE 5092 isolated from the Maasai traditional fermented milk product kule naoto was sequenced, and sequence analysis showed the assembled genome size to be 3,285,094 bp, containing a predicted total of 3,111 protein-encoding genes, 17 rRNAs, and 70 tRNAs.

| S-EPMC4891645 | biostudies-literature

Genome Sequence of Lacticaseibacillus rhamnosus Strain NCDC610, Isolated from a Traditional Cereal-Based Fermented Milk Product (Raabadi)

Project description:ABSTRACT We announce the draft genome sequence of Lacticaseibacillus rhamnosus NCDC610, an isolate from an Indian traditional cereal-based fermented milk product (Raabadi). The genome size of Lacticaseibacillus rhamnosus NCDC610 is 2.91 Mb with the assembled sequence, and the genome consists of 67 contigs.

| S-EPMC8582304 | biostudies-literature

Whole Genome Sequence of the Probiotic Strain Lactobacillus paracasei N1115, Isolated from Traditional Chinese Fermented Milk.

Project description:Lactobacillus paracasei N1115 is a new strain with probiotic properties isolated from traditional homemade dairy products in Inner Mongolia, China. Here, we report the complete genome sequence of L. paracasei N1115, which shows high similarity to the well-studied probiotic Lactobacillus rhamnosus GG, and 3 structures turned out to be inversions, according to the colinearity analysis of the BLAST alignment.

| S-EPMC3953185 | biostudies-literature

Complete Genome Sequence of Lactobacillus bulgaricus VHProbi R03, a Potential Fermentation Strain Isolated from Fermented Milk.

Project description:The Lactobacillus bulgaricus strain VHProbi R03 is a novel starter culture that was isolated from naturally fermented milk. Whole-genome sequencing-based analysis is an ideal approach to elucidate the probiotic mechanism of action of this strain. Its genome contains a circular chromosome with 1,873,403 bp, and no plasmids exist in the genome.

| S-EPMC9933673 | biostudies-literature

Complete Genome Sequence of Lactobacillus curvatus NFH-Km12, Isolated from the Japanese Traditional Fish Fermented Food Kabura-zushi.

Project description:Kabura-zushi is a traditional Japanese fermented food made from yellowtail, rice, salt, and k?ji. In this study, the complete genomic sequence of Lactobacillus curvatus NFH-Km12, isolated from this unique food, is reported. NFH-Km12 has a 1.9-Mbp chromosome and contains 5 plasmids.

| S-EPMC6211346 | biostudies-literature

Complete Genome Sequence of Lactobacillus rhamnosus Strain LRB.

Project description:Lactobacillus rhamnosus is a Gram-positive facultative heterofermentative lactic acid bacterium. It is often isolated from the gastrointestinal tract, mouth, vagina, and fermented dairy products. We have isolated the L. rhamnosus strain LRB from a healthy baby tooth that had naturally fallen out. Here, we report the annotated whole-genome sequence of LRB.

| S-EPMC5095466 | biostudies-literature

Complete Genome Sequence of Lactobacillus fermentum MTCC 25067 (Formerly TDS030603), a Viscous Exopolysaccharide-Producing Strain Isolated from Indian Fermented Milk.

Project description:Lactobacillus fermentum MTCC 25067 (formerly TDS030603) is capable of producing a highly viscous slime exopolysaccharide. We report here the complete genome sequence of the strain, which was deciphered by using PacBio single-molecule real-time sequencing technology.

| S-EPMC5374239 | biostudies-literature

Complete Genome Sequence of Lactobacillus plantarum Strain JDARSH, Isolated from Sheep Milk.

Project description:Lactobacillus plantarum strain JDARSH, a potential probiotic with a wide range of functions, was isolated from sheep milk. Here, we report the whole-genome sequence of this bacterium. The draft genome yielded a 3.20-Mb genome and 2,980 protein-coding sequences.

| S-EPMC6952652 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.

Project description:Lactobacillus rhamnosus is a facultatively heterofermentative lactic acid bacterium and is frequently isolated from human gastrointestinal mucosa of healthy individuals. L. rhamnosus ATCC 53103, isolated from a healthy human intestinal flora, is one of the most widely used and well-documented probiotics. Here, we report the finished and annotated genome sequence of this organism.

| S-EPMC2786603 | biostudies-literature

Complete Genome Sequence of Staphylococcus succinus 14BME20 Isolated from a Traditional Korean Fermented Soybean Food.

Project description:The complete genome sequence of Staphylococcus succinus 14BME20, isolated from a Korean fermented soybean food and selected as a possible starter culture candidate, was determined. Comparative genome analysis with S. succinus CSM-77 from a Triassic salt mine revealed the presence of strain-specific genes for lipid degradation in strain 14BME20.

| S-EPMC5334592 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data