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A novel community driven software for functional enrichment analysis of extracellular vesicles data.

ABSTRACT: Bioinformatics tools are imperative for the in depth analysis of heterogeneous high-throughput data. Most of the software tools are developed by specific laboratories or groups or companies wherein they are designed to perform the required analysis for the group. However, such software tools may fail to capture "what the community needs in a tool". Here, we describe a novel community-driven approach to build a comprehensive functional enrichment analysis tool. Using the existing FunRich tool as a template, we invited researchers to request additional features and/or changes. Remarkably, with the enthusiastic participation of the community, we were able to implement 90% of the requested features. FunRich enables plugin for extracellular vesicles wherein users can download and analyse data from Vesiclepedia database. By involving researchers early through community needs software development, we believe that comprehensive analysis tools can be developed in various scientific disciplines.

SUBMITTER: Pathan M 

PROVIDER: S-EPMC5505018 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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A novel community driven software for functional enrichment analysis of extracellular vesicles data.

Pathan Mohashin M   Keerthikumar Shivakumar S   Chisanga David D   Alessandro Riccardo R   Ang Ching-Seng CS   Askenase Philip P   Batagov Arsen O AO   Benito-Martin Alberto A   Camussi Giovanni G   Clayton Aled A   Collino Federica F   Di Vizio Dolores D   Falcon-Perez Juan Manuel JM   Fonseca Pedro P   Fonseka Pamali P   Fonseka Pamali P   Fontana Simona S   Gho Yong Song YS   Hendrix An A   Hoen Esther Nolte-'t EN   Iraci Nunzio N   Kastaniegaard Kenneth K   Kislinger Thomas T   Kowal Joanna J   Kurochkin Igor V IV   Leonardi Tommaso T   Liang Yaxuan Y   Llorente Alicia A   Lunavat Taral R TR   Maji Sayantan S   Monteleone Francesca F   Øverbye Anders A   Panaretakis Theocharis T   Patel Tushar T   Peinado Héctor H   Pluchino Stefano S   Principe Simona S   Ronquist Goran G   Royo Felix F   Sahoo Susmita S   Spinelli Cristiana C   Stensballe Allan A   Théry Clotilde C   van Herwijnen Martijn J C MJC   Wauben Marca M   Welton Joanne L JL   Zhao Kening K   Mathivanan Suresh S  

Journal of extracellular vesicles 20170526 1

Bioinformatics tools are imperative for the in depth analysis of heterogeneous high-throughput data. Most of the software tools are developed by specific laboratories or groups or companies wherein they are designed to perform the required analysis for the group. However, such software tools may fail to capture "what the community needs in a tool". Here, we describe a novel community-driven approach to build a comprehensive functional enrichment analysis tool. Using the existing FunRich tool as  ...[more]

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