Dataset Information

Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures.

ABSTRACT: The majority of Drosophila genes are expressed in a temperature-dependent manner, but the way in which small RNAs may contribute to this effect is completely unknown as we currently lack an idea of how small RNA transcriptomes change as a function of temperature. Applying high-throughput sequencing techniques complemented by quantitative real-time PCR experiments, we demonstrate that altered ambient temperature induces drastic but reversible changes in sequence composition and total abundance of both miRNA and piRNA populations. Further, mRNA sequencing reveals that the expression of miRNAs and their predicted target transcripts correlates inversely, suggesting that temperature-responsive miRNAs drive adaptation to different ambient temperatures on the transcriptome level. Finally, we demonstrate that shifts in temperature affect both primary and secondary piRNA pools, and the observed aberrations are consistent with altered expression levels of the involved Piwi-pathway factors. We further reason that enhanced ping-pong processing at 29°C is driven by dissolved RNA secondary structures at higher temperatures, uncovering target sites that are not accessible at low temperatures. Together, our results show that small RNAs are an important part of epigenetic regulatory mechanisms that ensure homeostasis and adaptation under fluctuating environmental conditions.

SUBMITTER: Fast I

PROVIDER: S-EPMC5558905 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Temperature-responsive miRNAs in <i>Drosophila</i> orchestrate adaptation to different ambient temperatures.

Fast Isabel I Hewel Charlotte C Wester Laura L Schumacher Julia J Gebert Daniel D Zischler Hans H Berger Christian C Rosenkranz David D

RNA (New York, N.Y.) 20170619 9

The majority of <i>Drosophila</i> genes are expressed in a temperature-dependent manner, but the way in which small RNAs may contribute to this effect is completely unknown as we currently lack an idea of how small RNA transcriptomes change as a function of temperature. Applying high-throughput sequencing techniques complemented by quantitative real-time PCR experiments, we demonstrate that altered ambient temperature induces drastic but reversible changes in sequence composition and total abund ...[more]

PMID: 28630141

Similar Datasets

Project description:Listeria monocytogenes is a foodborne pathogen that can cause invasive severe human illness (listeriosis) in susceptible patients. Most human listeriosis cases appear to be caused by consumption of refrigerated ready-to-eat foods. Although initial contamination levels in foods are usually low, the ability of these bacteria to survive and multiply at low temperatures allows it to reach levels high enough to cause disease. This study explores the set of proteins that might have an association with L. monocytogenes adaptation to different temperatures. Cultures were grown in biofilm, the most widespread mode of growth in natural and industrial realms. Protein extractions were performed from three different growth temperatures (10, 25, and 37°C) and two growth phases (early stage and mature biofilm). L. monocytogenes subproteomes were targeted using three extraction methods: trypsin-enzymatic shaving, biotin-labeling and cell fractionation. The different subproteomes obtained were separated and analyzed by shotgun proteomics using high-performance liquid chromatography combined with tandem mass spectrometry (LC-OrbiTrap LTQVelos, ThermoFisher Scientific). A total of 141 (biotinylation), 98 (shaving) and 910 (fractionation) proteins were identified. Throughout the 920 unique proteins identified, many are connected to basic cell functions, but some are linked with thermoregulation. We observed some noteworthy protein abundance shifts associated with the major adaptation to cold mechanisms present in L. monocytogenes, namely: the role of ribosomes and the stressosome with a higher abundance of the general stress protein Ctc (Rl25) and the general stress transcription factor sigma B (σB), changes in cell fluidity and motility seen by higher levels of foldase protein PrsA2 and flagellin (FlaA), the uptake of osmolytes with a higher abundance of glycine betaine (GbuB) and carnitine transporters (OpucA), and the relevance of the overexpression of chaperone proteins such as cold shock proteins (CspLA and Dps). As for 37°C, we observed a significantly higher percentage of proteins associated with transcriptional or translational activity present in higher abundance upon comparison with the colder settings. These contrasts of protein expression throughout several conditions will enrich databases and help to model the regulatory circuitry that drives adaptation of L. monocytogenes to environments.

Project description:Valery M. Gavrilov (2017) Total evaporative water loss (TEWL) in Passeriformes and Non-Passeriformes was estimated by simultaneous measurements of energy expenditure and mass loss in resting birds. It was found that the percentage of heat dissipated by water evaporation depends on body size. Published data for 102 bird species were analyzed together with my own measurements for 157 bird species at thermally neutral temperatures (mostly 25°C) to establish the following relationship between TEWL and body mass: TEWL25°C Aves = 0.28 m0.701, R 2 = 0.92, where TEWL is in g H2O/day and m is body mass (g). The scaling exponent 0.701 ± 0.007 is 0.05 greater than for the relationship of basal metabolic rate (BMR) to body mass. It was found that TEWL in passerines is higher than in non-passerines at all ambient temperatures by 50% at 25°C, 30% at 0°C, 39% at the lower critical temperature, and 59% at the upper critical temperature. The dependence of water loss on body mass at different ambient temperatures (T A) was found to vary in the same manner as evaporative heat loss. TEWL in Passeriformes is approximately 25-60% higher than in Non-Passeriformes (particularly at high T A), which is consistent with the ratio of their BMR levels. Within the thermoneutral zone, the proportion of heat dissipated by evaporation increases by approximately 2.6-fold in small passerines and by almost 4.1-fold in large passerines with the transition from the lower to upper critical temperature. In non-passerines, the proportion of evaporative heat losses increases by approximately 2.7 times within the thermoneutral zone in both large and small birds. The high basal metabolic rate in Passeriformes involves benefits like a higher maximum metabolic power and the ability to breed at lower ambient temperatures, but it comes with a cost: a significant expenditure of evaporative water. This cost is important because it is found to increase with body size in Passeriformes due to the forced evaporative heat loss, but it shows virtually no increase with body size in Non-Passeriformes. Thus, despite a high BMR significantly increasing ecological opportunities, this way of expanding the ecological niches is possible for the small size class only. These findings suggest that the high level of basal metabolic rate in Passeriformes in comparison to Non-Passeriformes determines the necessity for the former to utilize considerably larger amounts of water for evaporation to maintain the needed heat balance, especially at higher ambient temperatures and at larger body sizes.

Dataset Information

Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures.

Publications

Temperature-responsive miRNAs in <i>Drosophila</i> orchestrate adaptation to different ambient temperatures.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets