Unknown

Dataset Information

0

Exploring genetic suppression interactions on a global scale.


ABSTRACT: Genetic suppression occurs when the phenotypic defects caused by a mutation in a particular gene are rescued by a mutation in a second gene. To explore the principles of genetic suppression, we examined both literature-curated and unbiased experimental data, involving systematic genetic mapping and whole-genome sequencing, to generate a large-scale suppression network among yeast genes. Most suppression pairs identified novel relationships among functionally related genes, providing new insights into the functional wiring diagram of the cell. In addition to suppressor mutations, we identified frequent secondary mutations,in a subset of genes, that likely cause a delay in the onset of stationary phase, which appears to promote their enrichment within a propagating population. These findings allow us to formulate and quantify general mechanisms of genetic suppression.

SUBMITTER: van Leeuwen J 

PROVIDER: S-EPMC5562937 | biostudies-literature | 2016 Nov

REPOSITORIES: biostudies-literature

altmetric image

Publications

Exploring genetic suppression interactions on a global scale.

van Leeuwen Jolanda J   Pons Carles C   Mellor Joseph C JC   Yamaguchi Takafumi N TN   Friesen Helena H   Koschwanez John J   Ušaj Mojca Mattiazzi MM   Pechlaner Maria M   Takar Mehmet M   Ušaj Matej M   VanderSluis Benjamin B   Andrusiak Kerry K   Bansal Pritpal P   Baryshnikova Anastasia A   Boone Claire E CE   Cao Jessica J   Cote Atina A   Gebbia Marinella M   Horecka Gene G   Horecka Ira I   Kuzmin Elena E   Legro Nicole N   Liang Wendy W   van Lieshout Natascha N   McNee Margaret M   San Luis Bryan-Joseph BJ   Shaeri Fatemeh F   Shuteriqi Ermira E   Sun Song S   Yang Lu L   Youn Ji-Young JY   Yuen Michael M   Costanzo Michael M   Gingras Anne-Claude AC   Aloy Patrick P   Oostenbrink Chris C   Murray Andrew A   Graham Todd R TR   Myers Chad L CL   Andrews Brenda J BJ   Roth Frederick P FP   Boone Charles C  

Science (New York, N.Y.) 20161101 6312


Genetic suppression occurs when the phenotypic defects caused by a mutation in a particular gene are rescued by a mutation in a second gene. To explore the principles of genetic suppression, we examined both literature-curated and unbiased experimental data, involving systematic genetic mapping and whole-genome sequencing, to generate a large-scale suppression network among yeast genes. Most suppression pairs identified novel relationships among functionally related genes, providing new insights  ...[more]

Similar Datasets

| 6520 | ecrin-mdr-crc
| S-EPMC4272565 | biostudies-literature
| S-EPMC2373897 | biostudies-literature
| S-EPMC4023449 | biostudies-literature
2012-11-15 | E-GEOD-33748 | biostudies-arrayexpress
| S-EPMC6980207 | biostudies-literature
2012-11-15 | GSE33748 | GEO
2012-04-21 | E-TABM-1147 | biostudies-arrayexpress
| S-EPMC3117325 | biostudies-literature