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GuideScan software for improved single and paired CRISPR guide RNA design.


ABSTRACT: We present GuideScan software for the design of CRISPR guide RNA libraries that can be used to edit coding and noncoding genomic regions. GuideScan produces high-density sets of guide RNAs (gRNAs) for single- and paired-gRNA genome-wide screens. We also show that the trie data structure of GuideScan enables the design of gRNAs that are more specific than those designed by existing tools.

SUBMITTER: Perez AR 

PROVIDER: S-EPMC5607865 | biostudies-literature | 2017 Apr

REPOSITORIES: biostudies-literature

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GuideScan software for improved single and paired CRISPR guide RNA design.

Perez Alexendar R AR   Pritykin Yuri Y   Vidigal Joana A JA   Chhangawala Sagar S   Zamparo Lee L   Leslie Christina S CS   Ventura Andrea A  

Nature biotechnology 20170306 4


We present GuideScan software for the design of CRISPR guide RNA libraries that can be used to edit coding and noncoding genomic regions. GuideScan produces high-density sets of guide RNAs (gRNAs) for single- and paired-gRNA genome-wide screens. We also show that the trie data structure of GuideScan enables the design of gRNAs that are more specific than those designed by existing tools. ...[more]

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