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Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.


ABSTRACT: We present a 3D-fluorescence imaging and classification tool for high throughput analysis of microbial eukaryotes in environmental samples. It entails high-content feature extraction that permits accurate automated taxonomic classification and quantitative data about organism ultrastructures and interactions. Using plankton samples from the Tara Oceans expeditions, we validate its applicability to taxonomic profiling and ecosystem analyses, and discuss its potential for future integration of eukaryotic cell biology into evolutionary and ecological studies.

SUBMITTER: Colin S 

PROVIDER: S-EPMC5663481 | biostudies-literature | 2017 Oct

REPOSITORIES: biostudies-literature

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Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.

Colin Sebastien S   Coelho Luis Pedro LP   Sunagawa Shinichi S   Bowler Chris C   Karsenti Eric E   Bork Peer P   Pepperkok Rainer R   de Vargas Colomban C  

eLife 20171031


We present a 3D-fluorescence imaging and classification tool for high throughput analysis of microbial eukaryotes in environmental samples. It entails high-content feature extraction that permits accurate automated taxonomic classification and quantitative data about organism ultrastructures and interactions. Using plankton samples from the <i>Tara</i> Oceans expeditions, we validate its applicability to taxonomic profiling and ecosystem analyses, and discuss its potential for future integration  ...[more]

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