Browse
Submit Data
Databases
API
Help

Dataset Information

34 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequences of Vibrio cholerae-Specific Bacteriophages 24 and X29.

ABSTRACT: The complete genomes of two Vibrio cholerae bacteriophages of potential interest for cholera bacteriophage (phage) therapy were sequenced and annotated. The genome size of phage 24 is 44,395 bp encoding 71 putative proteins, and that of phage X29 is 41,569 bp encoding 68 putative proteins.

SUBMITTER: Bhandare SG

PROVIDER: S-EPMC5690320 | biostudies-literature | 2017 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequences of <i>Vibrio cholerae</i>-Specific Bacteriophages 24 and X29.

Bhandare Sudhakar G SG Warry Andrew A Emes Richard D RD Hooton Steven P T SPT Barrow Paul A PA Atterbury Robert J RJ

Genome announcements 20171116 46

The complete genomes of two <i>Vibrio cholerae</i> bacteriophages of potential interest for cholera bacteriophage (phage) therapy were sequenced and annotated. The genome size of phage 24 is 44,395 bp encoding 71 putative proteins, and that of phage X29 is 41,569 bp encoding 68 putative proteins. ...[more]

PMID: 29146843

Similar Datasets

Complete Genome Sequences of Two Vibrio natriegens Bacteriophages.

Project description:Vibrio natriegens, a fast-growing Gram-negative bacterium, is gaining interest as a platform for rapid biotechnology applications and metabolic engineering. Only a few bacteriophages that infect this bacterium have been identified. Here, we describe the isolation and characterization of two V. natriegens bacteriophages isolated from Hatches Creek, Wellfleet, Massachusetts.

| S-EPMC7645673 | biostudies-literature

Complete Genome Sequences of Seven Vibrio cholerae Phages Isolated in China.

Project description:The complete genome sequences of seven closely related Vibrio cholerae phages isolated from environmental sites in southeastern China are reported here. Phages QH, CJY, H1, H2, H3, J2, and J3 are members of the Podoviridae family and are highly similar to the previously sequenced Vibrio phages VP2, VP5, and phiVC8.

| S-EPMC5701463 | biostudies-literature

Complete Genome Sequences of Two Marine Vibrio cholerae Strains Isolated from the South Coast of Sweden.

Project description:Vibrio cholerae serogroups O1 and O139 are commonly associated with diarrhea, while non-O1-O139 strains may cause wound infections. Here, we present the genome sequences of two V. cholerae strains isolated from blue mussels (Mytilus edulis) collected in coastal waters of southern Sweden.

| S-EPMC5084856 | biostudies-literature

Complete Genome Sequences of Three Bacillus anthracis Bacteriophages.

Project description:The new highly effective Bacillus anthracis phages Negev_SA, Carmel_SA, and Tavor_SA were isolated from soil samples, and their complete genomes were sequenced and analyzed. The isolated phages have potential use in future phage therapy treatment against anthrax.

| S-EPMC5754477 | biostudies-literature

Complete Genome Sequences of Two Mycobacterium smegmatis Bacteriophages.

Project description:Mycobacterium smegmatis, an acid-fast bacterial species in the phylum Actinobacteria, has often been used as a substitute for pathogenic mycobacteria in research. Here, we describe the isolation and characterization of two M. smegmatis bacteriophages, Penelope2018 and Miniwave.

| S-EPMC8407744 | biostudies-literature

Complete Genome Sequences of 38 Gordonia sp. Bacteriophages.

Project description:We report here the genome sequences of 38 newly isolated bacteriophages using Gordonia terrae 3612 (ATCC 25594) and Gordonia neofelifaecis NRRL59395 as bacterial hosts. All of the phages are double-stranded DNA (dsDNA) tail phages with siphoviral morphologies, with genome sizes ranging from 17,118 bp to 93,843 bp and spanning considerable nucleotide sequence diversity.

| S-EPMC5255912 | biostudies-literature

Complete Genome Sequences of Five Paenibacillus larvae Bacteriophages.

Project description:Paenibacillus larvae is a pathogen of honeybees that causes American foulbrood (AFB). We isolated bacteriophages from soil containing bee debris collected near beehives in Utah. We announce five high-quality complete genome sequences, which represent the first completed genome sequences submitted to GenBank for any P. larvae bacteriophage.

| S-EPMC3828306 | biostudies-literature

Complete Genome Sequences of Bacillus Bacteriophages Wes44 and Carmen17.

Project description:Wes44 and Carmen17 are siphoviruses that infect Bacillus thuringiensis DSM-350. Wes44 contains 42,248 base pairs and 54 predicted genes; Carmen17 contains 41,820 base pairs and 51 predicted genes. The genomes are 95% similar to each other and distantly related to Bacillus cereus bacteriophage PBC1.

| S-EPMC6430321 | biostudies-literature

Complete genome sequence of Vibrio vulnificus MO6-24/O.

Project description:Vibrio vulnificus is the causative agent of life-threatening septicemia and severe wound infections. Here, we announce the complete annotated genome sequence of V. vulnificus MO6-24/O, isolated from a patient with septicemia. When it is compared with previously known V. vulnificus genomes, the genome of this bacterium shows a unique genetic makeup, including phagelike elements, carbohydrate metabolism-related genes, and the superintegron.

| S-EPMC3133017 | biostudies-literature

Quorum Regulated Resistance of Vibrio cholerae against Environmental Bacteriophages.

Project description:Predation by bacteriophages can significantly influence the population structure of bacterial communities. Vibrio cholerae the causative agent of cholera epidemics interacts with numerous phages in the aquatic ecosystem, and in the intestine of cholera patients. Seasonal epidemics of cholera reportedly collapse due to predation of the pathogen by phages. However, it is not clear how sufficient number of the bacteria survive to seed the environment in the subsequent epidemic season. We found that bacterial cell density-dependent gene expression termed "quorum sensing" which is regulated by signal molecules called autoinducers (AIs) can protect V. cholerae against predatory phages. V. cholerae mutant strains carrying inactivated AI synthase genes were significantly more susceptible to multiple phages compared to the parent bacteria. Likewise when mixed cultures of phage and bacteria were supplemented with exogenous autoinducers CAI-1 or AI-2 produced by recombinant strains carrying cloned AI synthase genes, increased survival of V. cholerae and a decrease in phage titer was observed. Mutational analyses suggested that the observed effects of autoinducers are mediated in part through the quorum sensing-dependent production of haemaglutinin protease, and partly through downregulation of phage receptors. These results have implication in developing strategies for phage mediated control of cholera.

| S-EPMC5124996 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data