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First-generation annotations for the fathead minnow (Pimephales promelas) genome.


ABSTRACT: Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data in context with the genomic sequence. The present study extends the utility of the fathead minnow genome and supports the continued development of this species as a model organism for predictive toxicology. Environ Toxicol Chem 2017;36:3436-3442. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

SUBMITTER: Saari TW 

PROVIDER: S-EPMC5733733 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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First-generation annotations for the fathead minnow (Pimephales promelas) genome.

Saari Travis W TW   Schroeder Anthony L AL   Ankley Gerald T GT   Villeneuve Daniel L DL  

Environmental toxicology and chemistry 20170829 12


Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data in context with the genomic sequence. The present study extends the utility of the fathead minnow genome and supports the continued development of this species as a model organism for predictive toxic  ...[more]

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