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Automated assembly of species metabolomes through data submission into a public repository.

ABSTRACT: Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

SUBMITTER: Salek RM

PROVIDER: S-EPMC5737527 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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Automated assembly of species metabolomes through data submission into a public repository.

Salek Reza M RM Conesa Pablo P Cochrane Keeva K Haug Kenneth K Williams Mark M Kale Namrata N Moreno Pablo P Jayaseelan Kalai Vanii KV Macias Jose Ramon JR Nainala Venkata Chandrasekhar VC Hall Robert D RD Reed Laura K LK Viant Mark R MR O'Donovan Claire C Steinbeck Christoph C

GigaScience 20170801 8

Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, whic ...[more]

PMID: 28830114

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