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Metabolic capability and in situ activity of microorganisms in an oil reservoir.

ABSTRACT: BACKGROUND:Microorganisms have long been associated with oxic and anoxic degradation of hydrocarbons in oil reservoirs and oil production facilities. While we can readily determine the abundance of microorganisms in the reservoir and study their activity in the laboratory, it has been challenging to resolve what microbes are actively participating in crude oil degradation in situ and to gain insight into what metabolic pathways they deploy. RESULTS:Here, we describe the metabolic potential and in situ activity of microbial communities obtained from the Jiangsu Oil Reservoir (China) by an integrated metagenomics and metatranscriptomics approach. Almost complete genome sequences obtained by differential binning highlight the distinct capability of different community members to degrade hydrocarbons under oxic or anoxic condition. Transcriptomic data delineate active members of the community and give insights that Acinetobacter species completely oxidize alkanes into carbon dioxide with the involvement of oxygen, and Archaeoglobus species mainly ferment alkanes to generate acetate which could be consumed by Methanosaeta species. Furthermore, nutritional requirements based on amino acid and vitamin auxotrophies suggest a complex network of interactions and dependencies among active community members that go beyond classical syntrophic exchanges; this network defines community composition and microbial ecology in oil reservoirs undergoing secondary recovery. CONCLUSION:Our data expand current knowledge of the metabolic potential and role in hydrocarbon metabolism of individual members of thermophilic microbial communities from an oil reservoir. The study also reveals potential metabolic exchanges based on vitamin and amino acid auxotrophies indicating the presence of complex network of interactions between microbial taxa within the community.

SUBMITTER: Liu YF

PROVIDER: S-EPMC5756336 | biostudies-literature | 2018 Jan

REPOSITORIES: biostudies-literature

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Metabolic capability and in situ activity of microorganisms in an oil reservoir.

Liu Yi-Fan YF Galzerani Daniela Domingos DD Mbadinga Serge Maurice SM Zaramela Livia S LS Gu Ji-Dong JD Mu Bo-Zhong BZ Zengler Karsten K

Microbiome 20180105 1

<h4>Background</h4>Microorganisms have long been associated with oxic and anoxic degradation of hydrocarbons in oil reservoirs and oil production facilities. While we can readily determine the abundance of microorganisms in the reservoir and study their activity in the laboratory, it has been challenging to resolve what microbes are actively participating in crude oil degradation in situ and to gain insight into what metabolic pathways they deploy.<h4>Results</h4>Here, we describe the metabolic ...[more]

PMID: 29304850

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Project description:The effect of distillery waste product (fusel oil) as an alternative external organic carbon source (EOCS) was investigated in terms of the metabolic properties of denitrifying polyphosphate accumulating organisms (DPAOs). Samples of the non-acclimated biomass were collected from a local full-scale wastewater treatment plant employing A2/O type bioreactors. The acclimated biomass was obtained after cultivation (with fusel oil added) in a bench-scale reactor with a process configuration similar to the full-scale bioreactor. Changes in the functional properties of the biomass were investigated by measuring the phosphate release/uptake rates (PRRs and PURs), and nitrate utilization rates (NURs) with fusel oil in anaerobic-anoxic batch tests. Furthermore, a validated extended Activated Sludge Model no 2d (ASM2d) was used as a supporting tool to analyze the experimental results and estimate the contribution of DPAOs to the overall denitrification. In the non-acclimated biomass with fusel oil, the PRRs, PURs and NURs were low and close to the rates obtained in a reference test without adding EOCS. With the acclimated biomass, the PUR and NUR increased significantly, i.e., 3.5 and 2.7 times, respectively. In the non-acclimated biomass, approximately 60.0?±?3.6% and 20.0?±?2.2% of the total NUR was attributed to the utilization of endogenous carbon and examined EOCS, respectively. The remaining portion (20% of the total NUR) was attributed to PHA utilization (linked to PO4-P uptake) by DPAOs. With the acclimated biomass, the contribution of the EOCS to the NUR increased to approximately 60%, while the contribution of the endogenous carbon source decreased accordingly. Very accurate predictions of PURs and NURs (R2?=?0.97-1.00) were obtained with the extended ASM2d. Based on model simulations, it was estimated that the activity of DPAOs and denitrifying ordinary heterotrophic organisms corresponded to approximately 20% and 80% of the total NUR, respectively.

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Metabolic capability and in situ activity of microorganisms in an oil reservoir.

Publications

Metabolic capability and in situ activity of microorganisms in an oil reservoir.

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