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Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge.

ABSTRACT: The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-?-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species.

SUBMITTER: Skraban J 

PROVIDER: S-EPMC5790571 | biostudies-literature | 2018 Jan - Mar

REPOSITORIES: biostudies-literature

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Draft genome sequence of Chryseobacterium limigenitum SUR2<sup>T</sup> (LMG 28734<sup>T</sup>) isolated from dehydrated sludge.

Škraban Jure J   Kyrpides Nikos C NC   Shapiro Nicole N   Whitman William B WB   Trček Janja J  

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 20170718 1

The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addi  ...[more]

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