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Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K.

ABSTRACT: The complete genome sequence of Cucumber mosaic virus strain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with subgroup IA isolates, indicating a likely recombination event.

SUBMITTER: Moyle R

PROVIDER: S-EPMC5814493 | biostudies-literature | 2018 Feb

REPOSITORIES: biostudies-literature

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Analysis of the Complete Genome Sequence of <i>Cucumber mosaic virus</i> Strain K.

Moyle Richard R Pretorius Lara-Simone LS Shuey Louise S LS Nowak Ekaterina E Schenk Peer M PM

Genome announcements 20180215 7

The complete genome sequence of <i>Cucumber mosaic virus</i> strain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with subgroup IA isolates, indicating a likely recombination event. ...[more]

PMID: 29449390

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