Haplotype-based allele mining in the Japan-MAGIC rice population.
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ABSTRACT:
SUBMITTER: Ogawa D
PROVIDER: S-EPMC5847589 | biostudies-literature | 2018 Mar
REPOSITORIES: biostudies-literature
Publications
Haplotype-based allele mining in the Japan-MAGIC rice population.
Ogawa Daisuke D Yamamoto Eiji E Ohtani Toshikazu T Kanno Noriko N Tsunematsu Hiroshi H Nonoue Yasunori Y Yano Masahiro M Yamamoto Toshio T Yonemaru Jun-Ichi JI
Scientific reports 20180312 1
Multi-parent advanced generation inter-cross (MAGIC) lines have broader genetic variation than bi-parental recombinant inbred lines. Genome-wide association study (GWAS) using high number of DNA polymorphisms such as single-nucleotide polymorphisms (SNPs) is a popular tool for allele mining in MAGIC populations, in which the associations of phenotypes with SNPs are investigated; however, the effects of haplotypes from multiple founders on phenotypes are not considered. Here, we describe an impro ...[more]
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