Dataset Information

Congenital hypogonadotropic hypogonadism and constitutional delay of growth and puberty have distinct genetic architectures.

ABSTRACT: OBJECTIVE:Congenital hypogonadotropic hypogonadism (CHH) and constitutional delay of growth and puberty (CDGP) represent rare and common forms of GnRH deficiency, respectively. Both CDGP and CHH present with delayed puberty, and the distinction between these two entities during early adolescence is challenging. More than 30 genes have been implicated in CHH, while the genetic basis of CDGP is poorly understood. DESIGN:We characterized and compared the genetic architectures of CHH and CDGP, to test the hypothesis of a shared genetic basis between these disorders. METHODS:Exome sequencing data were used to identify rare variants in known genes in CHH (n?=?116), CDGP (n?=?72) and control cohorts (n?=?36 874 ExAC and n?=?405 CoLaus). RESULTS:Mutations in at least one CHH gene were found in 51% of CHH probands, which is significantly higher than in CDGP (7%, P?=?7.6?×?10-11) or controls (18%, P?=?5.5?×?10-12). Similarly, oligogenicity (defined as mutations in more than one gene) was common in CHH patients (15%) relative to CDGP (1.4%, P?=?0.002) and controls (2%, P?=?6.4?×?10-7). CONCLUSIONS:Our data suggest that CDGP and CHH have distinct genetic profiles, and this finding may facilitate the differential diagnosis in patients presenting with delayed puberty.

SUBMITTER: Cassatella D

PROVIDER: S-EPMC5863472 | biostudies-literature | 2018 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Congenital hypogonadotropic hypogonadism and constitutional delay of growth and puberty have distinct genetic architectures.

Cassatella Daniele D Howard Sasha R SR Acierno James S JS Xu Cheng C Papadakis Georgios E GE Santoni Federico A FA Dwyer Andrew A AA Santini Sara S Sykiotis Gerasimos P GP Chambion Caroline C Meylan Jenny J Marino Laura L Favre Lucie L Li Jiankang J Liu Xuanzhu X Zhang Jianguo J Bouloux Pierre-Marc PM Geyter Christian De C Paepe Anne De A Dhillo Waljit S WS Ferrara Jean-Marc JM Hauschild Michael M Lang-Muritano Mariarosaria M Lemke Johannes R JR Flück Christa C Nemeth Attila A Phan-Hug Franziska F Pignatelli Duarte D Popovic Vera V Pekic Sandra S Quinton Richard R Szinnai Gabor G l'Allemand Dagmar D Konrad Daniel D Sharif Saba S Iyidir Özlem Turhan ÖT Stevenson Brian J BJ Yang Huanming H Dunkel Leo L Pitteloud Nelly N

European journal of endocrinology 20180201 4

<h4>Objective</h4>Congenital hypogonadotropic hypogonadism (CHH) and constitutional delay of growth and puberty (CDGP) represent rare and common forms of GnRH deficiency, respectively. Both CDGP and CHH present with delayed puberty, and the distinction between these two entities during early adolescence is challenging. More than 30 genes have been implicated in CHH, while the genetic basis of CDGP is poorly understood.<h4>Design</h4>We characterized and compared the genetic architectures of CHH ...[more]

PMID: 29419413

Similar Datasets

Project description:Congenital hypogonadotropic hypogonadism (cHH)/Kallmann syndrome (KS) is a rare genetic disorder with variable penetrance and a complex inheritance pattern. Consequently, it does not always follow Mendelian laws. More recently, digenic and oligogenic transmission has been recognized in 1.5-15% of cases. We report the results of a clinical and genetic investigation of five unrelated patients with cHH/KS analyzed using a customized gene panel. Patients were diagnosed according to the clinical, hormonal, and radiological criteria of the European Consensus Statement. DNA was analyzed using next-generation sequencing with a customized panel that included 31 genes. When available, first-degree relatives of the probands were also analyzed to assess genotype-phenotype segregation. The consequences of the identified variants on gene function were evaluated by analyzing the conservation of amino acids across species and by using molecular modeling. We found one new pathogenic variant of the CHD7 gene (c.576T>A, p.Tyr1928) and three new variants of unknown significance (VUSs) in IL17RD (c.960G>A, p.Met320Ile), FGF17 (c.208G>A, p.Gly70Arg), and DUSP6 (c.434T>G, p.Leu145Arg). All were present in the heterozygous state. Previously reported heterozygous variants were also found in the PROK2 (c.163del, p.Ile55*), CHD7 (c.c.2750C>T, p.Thr917Met and c.7891C>T, p.Arg2631*), FLRT3 (c.1106C>T, p.Ala369Val), and CCDC103 (c.461A>C, p.His154Pro) genes. Molecular modeling, molecular dynamics, and conservation analyses were performed on three out of the nine variants identified in our patients, namely, FGF17 (p.Gly70Arg), DUSP6 (p.Leu145Arg), and CHD7 p.(Thr917Met). Except for DUSP6, where the L145R variant was shown to disrupt the interaction between β6 and β3, needed for extracellular signal-regulated kinase 2 (ERK2) binding and recognition, no significant changes were identified between the wild-types and mutants of the other proteins. We found a new pathogenic variant of the CHD7 gene. The molecular modeling results suggest that the VUS of the DUSP6 (c.434T>G, p.Leu145Arg) gene may play a role in the pathogenesis of cHH. However, our analysis indicates that it is unlikely that the VUSs for the IL17RD (c.960G>A, p.Met320Ile) and FGF17 (c.208G>A, p.Gly70Arg) genes are involved in the pathogenesis of cHH. Functional studies are needed to confirm this hypothesis.

Dataset Information

Congenital hypogonadotropic hypogonadism and constitutional delay of growth and puberty have distinct genetic architectures.

Publications

Congenital hypogonadotropic hypogonadism and constitutional delay of growth and puberty have distinct genetic architectures.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets