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UpSetR: an R package for the visualization of intersecting sets and their properties.

ABSTRACT:

Motivation

Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed.

Results

We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties.

Availability and implementation

UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/ .

Contact

nils@hms.harvard.edu.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Conway JR

PROVIDER: S-EPMC5870712 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature

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UpSetR: an R package for the visualization of intersecting sets and their properties.

Conway Jake R JR Lex Alexander A Gehlenborg Nils N

Bioinformatics (Oxford, England) 20170901 18

<h4>Motivation</h4>Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed.<h4>Results</h4>We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties.<h4>Availability and implementation</h4>UpSetR is available at https://git ...[more]

PMID: 28645171

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