Dataset Information

Assessing the Impact of Spatial Resolution on the Estimation of Leaf Nitrogen Concentration Over the Full Season of Paddy Rice Using Near-Surface Imaging Spectroscopy Data.

ABSTRACT: Timely monitoring nitrogen status of rice crops with remote sensing can help us optimize nitrogen fertilizer management and reduce environmental pollution. Recently, the use of near-surface imaging spectroscopy is emerging as a promising technology that can collect hyperspectral images with spatial resolutions ranging from millimeters to decimeters. The spatial resolution is crucial for the efficiency in the image sampling across rice plants and the separation of leaf signals from the background. However, the optimal spatial resolution of such images for monitoring the leaf nitrogen concentration (LNC) in rice crops remains unclear. To assess the impact of spatial resolution on the estimation of rice LNC, we collected ground-based hyperspectral images throughout the entire growing season over 2 consecutive years and generated ten sets of images with spatial resolutions ranging from 1.3 to 450 mm. These images were used to determine the sensitivity of LNC prediction to spatial resolution with three groups of vegetation indices (VIs) and two multivariate methods Gaussian Process regression (GPR) and Partial least squares regression (PLSR). The reflectance spectra of sunlit-, shaded-, and all-leaf leaf pixels separated from background pixels at each spatial resolution were used to predict LNC with VIs, GPR and PLSR, respectively. The results demonstrated all-leaf pixels generally exhibited more stable performance than sunlit- and shaded-leaf pixels regardless of estimation approaches. The predictions of LNC required stage-specific LNC~VI models for each vegetative stage but could be performed with a single model for all the reproductive stages. Specifically, most VIs achieved stable performances from all the resolutions finer than 14 mm for the early tillering stage but from all the resolutions finer than 56 mm for the other stages. In contrast, the global models for the prediction of LNC across the entire growing season were successfully established with the approaches of GPR or PLSR. In particular, GPR generally exhibited the best prediction of LNC with the optimal spatial resolution being found at 28 mm. These findings represent significant advances in the application of ground-based imaging spectroscopy as a promising approach to crop monitoring and understanding the effects of spatial resolution on the estimation of rice LNC.

SUBMITTER: Zhou K

PROVIDER: S-EPMC6041568 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Assessing the Impact of Spatial Resolution on the Estimation of Leaf Nitrogen Concentration Over the Full Season of Paddy Rice Using Near-Surface Imaging Spectroscopy Data.

Zhou Kai K Cheng Tao T Zhu Yan Y Cao Weixing W Ustin Susan L SL Zheng Hengbiao H Yao Xia X Tian Yongchao Y

Frontiers in plant science 20180705

Timely monitoring nitrogen status of rice crops with remote sensing can help us optimize nitrogen fertilizer management and reduce environmental pollution. Recently, the use of near-surface imaging spectroscopy is emerging as a promising technology that can collect hyperspectral images with spatial resolutions ranging from millimeters to decimeters. The spatial resolution is crucial for the efficiency in the image sampling across rice plants and the separation of leaf signals from the background ...[more]

PMID: 30026750

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Project description:To develop a stable estimation model and identify effective wavelengths that could explain the variations in leaf nitrogen (N) concentration with different N supplies, growing seasons, ecological locations, growth stages, and wheat cultivars. Four field experiments were performed during two consecutive years (2017-2019) at three sites (Yuanyang, Hebi, and Wenxian) in Henan, China. In situ canopy spectral reflectance data under the aforementioned N supply conditions were obtained over a range of 400-950 nm (visible and near-infrared region). On the basis of the canopy raw spectral reflectance data and their subsequent transformation by two different techniques, first-derivative reflectance (FDR) and continuum removal (CR), four multivariate regression methods were comparatively analyzed and used to develop predictive models for estimating leaf N concentration: multiple linear regression (MLR), principal component regression (PCR), partial least square (PLS), and support vector machine (SVM). Results showed that leaf N concentration and canopy reflectance significantly varied with the levels of N fertilization, and a good correlation was observed for all the spectral techniques. Seven wavelengths with relatively higher r values than the bands of the raw spectra centered at 508, 525, 572, 709, 780, 876, and 925 nm were specified using the FDR technique. Based on the full wavelengths, the FDR-SVM model exhibited a good performance for leaf N concentration estimation, with coefficients of determination (r 2 val) for the validation datasets and corresponding relative percent deviations (RPDval) values of 0.842 and 2.383, respectively. However, the FDR-PLS yielded a more accurate assessment of the leaf N concentration than did the other methods, with r 2 val and RPDval values of 0.857 and 2.535, respectively. The variable importance in projection (VIP) scores from the FDR-PLS with the all canopy spectral region were used to screen the effective wavelengths of the spectral data. Therefore, six effective wavelengths centered at 525, 573, 710, 780, 875, and 924 nm were identified for leaf N concentration estimation. The SVM regression method with the effective wavelengths showed excellent performance for leaf N concentration estimation with r 2 val = 0.823 and RPDval = 2.280. These results demonstrated that the in situ canopy spectral technique is promising for the estimation of leaf N concentration in winter wheat based on the FDR-PLS regression model and the effective wavelengths identified.

Project description:Optimal management of free-ranging herbivores requires the accurate assessment of an animal's nutritional status. For this purpose 'near-infrared reflectance spectroscopy' (NIRS) is very useful, especially when nutritional assessment is done through faecal indicators such as faecal nitrogen (FN). In order to perform an NIRS calibration, the default protocol recommends starting by generating an initial equation based on at least 50-75 samples from the given species. Although this protocol optimises prediction accuracy, it limits the use of NIRS with rare or endangered species where sample sizes are often small. To overcome this limitation we tested a single NIRS equation (i.e., multispecies calibration) to predict FN in herbivores. Firstly, we used five herbivore species with highly contrasting digestive physiologies to build monospecies and multispecies calibrations, namely horse, sheep, Pyrenean chamois, red deer and European rabbit. Secondly, the equation accuracy was evaluated by two procedures using: (1) an external validation with samples from the same species, which were not used in the calibration process; and (2) samples from different ungulate species, specifically Alpine ibex, domestic goat, European mouflon, roe deer and cattle. The multispecies equation was highly accurate in terms of the coefficient of determination for calibration R2 = 0.98, standard error of validation SECV = 0.10, standard error of external validation SEP = 0.12, ratio of performance to deviation RPD = 5.3, and range error of prediction RER = 28.4. The accuracy of the multispecies equation to predict other herbivore species was also satisfactory (R2 > 0.86, SEP < 0.27, RPD > 2.6, and RER > 8.1). Lastly, the agreement between multi- and monospecies calibrations was also confirmed by the Bland-Altman method. In conclusion, our single multispecies equation can be used as a reliable, cost-effective, easy and powerful analytical method to assess FN in a wide range of herbivore species.

Dataset Information

Assessing the Impact of Spatial Resolution on the Estimation of Leaf Nitrogen Concentration Over the Full Season of Paddy Rice Using Near-Surface Imaging Spectroscopy Data.

Publications

Assessing the Impact of Spatial Resolution on the Estimation of Leaf Nitrogen Concentration Over the Full Season of Paddy Rice Using Near-Surface Imaging Spectroscopy Data.

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