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Considerations and consequences of allowing DNA sequence data as types of fungal taxa.


ABSTRACT: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.

SUBMITTER: Zamora JC 

PROVIDER: S-EPMC6048565 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature

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Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

Zamora Juan Carlos JC   Svensson Måns M   Kirschner Roland R   Olariaga Ibai I   Ryman Svengunnar S   Parra Luis Alberto LA   Geml József J   Rosling Anna A   Adamčík Slavomír S   Ahti Teuvo T   Aime M Catherine MC   Ainsworth A Martyn AM   Albert László L   Albertó Edgardo E   García Alberto Altés AA   Ageev Dmitry D   Agerer Reinhard R   Aguirre-Hudson Begoña B   Ammirati Joe J   Andersson Harry H   Angelini Claudio C   Antonín Vladimír V   Aoki Takayuki T   Aptroot André A   Argaud Didier D   Sosa Blanca Imelda Arguello BIA   Aronsen Arne A   Arup Ulf U   Asgari Bita B   Assyov Boris B   Atienza Violeta V   Bandini Ditte D   Baptista-Ferreira João Luís JL   Baral Hans-Otto HO   Baroni Tim T   Barreto Robert Weingart RW   Beker Henry H   Bell Ann A   Bellanger Jean-Michel JM   Bellù Francesco F   Bemmann Martin M   Bendiksby Mika M   Bendiksen Egil E   Bendiksen Katriina K   Benedek Lajos L   Bérešová-Guttová Anna A   Berger Franz F   Berndt Reinhard R   Bernicchia Annarosa A   Biketova Alona Yu AY   Bizio Enrico E   Bjork Curtis C   Boekhout Teun T   Boertmann David D   Böhning Tanja T   Boittin Florent F   Boluda Carlos G CG   Boomsluiter Menno W MW   Borovička Jan J   Brandrud Tor Erik TE   Braun Uwe U   Brodo Irwin I   Bulyonkova Tatiana T   Burdsall Harold H HH   Buyck Bart B   Burgaz Ana Rosa AR   Calatayud Vicent V   Callac Philippe P   Campo Emanuele E   Candusso Massimo M   Capoen Brigitte B   Carbó Joaquim J   Carbone Matteo M   Castañeda-Ruiz Rafael F RF   Castellano Michael A MA   Chen Jie J   Clerc Philippe P   Consiglio Giovanni G   Corriol Gilles G   Courtecuisse Régis R   Crespo Ana A   Cripps Cathy C   Crous Pedro W PW   da Silva Gladstone Alves GA   da Silva Meiriele M   Dam Marjo M   Dam Nico N   Dämmrich Frank F   Das Kanad K   Davies Linda L   De Crop Eske E   De Kesel Andre A   De Lange Ruben R   De Madrignac Bonzi Bárbara B   Dela Cruz Thomas Edison E TEE   Delgat Lynn L   Demoulin Vincent V   Desjardin Dennis E DE   Diederich Paul P   Dima Bálint B   Dios Maria Martha MM   Divakar Pradeep Kumar PK   Douanla-Meli Clovis C   Douglas Brian B   Drechsler-Santos Elisandro Ricardo ER   Dyer Paul S PS   Eberhardt Ursula U   Ertz Damien D   Esteve-Raventós Fernando F   Salazar Javier Angel Etayo JAE   Evenson Vera V   Eyssartier Guillaume G   Farkas Edit E   Favre Alain A   Fedosova Anna G AG   Filippa Mario M   Finy Péter P   Flakus Adam A   Fos Simón S   Fournier Jacques J   Fraiture André A   Franchi Paolo P   Molano Ana Esperanza Franco AEF   Friebes Gernot G   Frisch Andreas A   Fryday Alan A   Furci Giuliana G   Márquez Ricardo Galán RG   Garbelotto Matteo M   García-Martín Joaquina María JM   Otálora Mónica A García MAG   Sánchez Dania García DG   Gardiennet Alain A   Garnica Sigisfredo S   Benavent Isaac Garrido IG   Gates Genevieve G   da Cruz Lima Gerlach Alice A   Ghobad-Nejhad Masoomeh M   Gibertoni Tatiana B TB   Grebenc Tine T   Greilhuber Irmgard I   Grishkan Bella B   Groenewald Johannes Z JZ   Grube Martin M   Gruhn Gérald G   Gueidan Cécile C   Gulden Gro G   Gusmão Luis Fp LF   Hafellner Josef J   Hairaud Michel M   Halama Marek M   Hallenberg Nils N   Halling Roy E RE   Hansen Karen K   Harder Christoffer Bugge CB   Heilmann-Clausen Jacob J   Helleman Stip S   Henriot Alain A   Hernandez-Restrepo Margarita M   Herve Raphaël R   Hobart Caroline C   Hoffmeister Mascha M   Høiland Klaus K   Holec Jan J   Holien Håkon H   Hughes Karen K   Hubka Vit V   Huhtinen Seppo S   Ivančević Boris B   Jagers Marian M   Jaklitsch Walter W   Jansen AnnaElise A   Jayawardena Ruvishika S RS   Jeppesen Thomas Stjernegaard TS   Jeppson Mikael M   Johnston Peter P   Jørgensen Per Magnus PM   Kärnefelt Ingvar I   Kalinina Liudmila B LB   Kantvilas Gintaras G   Karadelev Mitko M   Kasuya Taiga T   Kautmanová Ivona I   Kerrigan Richard W RW   Kirchmair Martin M   Kiyashko Anna A   Knapp Dániel G DG   Knudsen Henning H   Knudsen Kerry K   Knutsson Tommy T   Kolařík Miroslav M   Kõljalg Urmas U   Košuthová Alica A   Koszka Attila A   Kotiranta Heikki H   Kotkova Vera V   Koukol Ondřej O   Kout Jiří J   Kovács Gábor M GM   Kříž Martin M   Kruys Åsa Å   Kučera Viktor V   Kudzma Linas L   Kuhar Francisco F   Kukwa Martin M   Arun Kumar T K TK   Kunca Vladimír V   Kušan Ivana I   Kuyper Thomas W TW   Lado Carlos C   Læssøe Thomas T   Lainé Patrice P   Langer Ewald E   Larsson Ellen E   Larsson Karl-Henrik KH   Laursen Gary G   Lechat Christian C   Lee Serena S   Lendemer James C JC   Levin Laura L   Lindemann Uwe U   Lindström Håkan H   Liu Xingzhong X   Hernandez Regulo Carlos Llarena RCL   Llop Esteve E   Locsmándi Csaba C   Lodge Deborah Jean DJ   Loizides Michael M   Lőkös László L   Luangsa-Ard Jennifer J   Lüderitz Matthias M   Lumbsch Thorsten T   Lutz Matthias M   Mahoney Dan D   Malysheva Ekaterina E   Malysheva Vera V   Manimohan Patinjareveettil P   Marin-Felix Yasmina Y   Marques Guilhermina G   Martínez-Gil Rubén R   Marson Guy G   Mata Gerardo G   Matheny P Brandon PB   Mathiassen Geir Harald GH   Matočec Neven N   Mayrhofer Helmut H   Mehrabi Mehdi M   Melo Ireneia I   Mešić Armin A   Methven Andrew S AS   Miettinen Otto O   Romero Ana M Millanes AMM   Miller Andrew N AN   Mitchell James K JK   Moberg Roland R   Moreau Pierre-Arthur PA   Moreno Gabriel G   Morozova Olga O   Morte Asunción A   Muggia Lucia L   González Guillermo Muñoz GM   Myllys Leena L   Nagy István I   Nagy László G LG   Neves Maria Alice MA   Niemelä Tuomo T   Nimis Pier Luigi PL   Niveiro Nicolas N   Noordeloos Machiel E ME   Nordin Anders A   Noumeur Sara Raouia SR   Novozhilov Yuri Y   Nuytinck Jorinde J   Ohenoja Esteri E   Fiuza Patricia Oliveira PO   Orange Alan A   Ordynets Alexander A   Ortiz-Santana Beatriz B   Pacheco Leticia L   Pál-Fám Ferenc F   Palacio Melissa M   Palice Zdeněk Z   Papp Viktor V   Pärtel Kadri K   Pawlowska Julia J   Paz Aurelia A   Peintner Ursula U   Pennycook Shaun S   Pereira Olinto Liparini OL   Daniëls Pablo Pérez PP   Pérez-De-Gregorio Capella Miquel À MÀ   Del Amo Carlos Manuel Pérez CMP   Gorjón Sergio Pérez SP   Pérez-Ortega Sergio S   Pérez-Vargas Israel I   Perry Brian A BA   Petersen Jens H JH   Petersen Ronald H RH   Pfister Donald H DH   Phukhamsakda Chayanard C   Piątek Marcin M   Piepenbring Meike M   Pino-Bodas Raquel R   Esquivel Juan Pablo Pinzón JPP   Pirot Paul P   Popov Eugene S ES   Popoff Orlando O   Álvaro María Prieto MP   Printzen Christian C   Psurtseva Nadezhda N   Purahong Witoon W   Quijada Luis L   Rambold Gerhard G   Ramírez Natalia A NA   Raja Huzefa H   Raspé Olivier O   Raymundo Tania T   Réblová Martina M   Rebriev Yury A YA   de Dios Reyes García Juan J   Ripoll Miguel Ángel Ribes MÁR   Richard Franck F   Richardson Mike J MJ   Rico Víctor J VJ   Robledo Gerardo Lucio GL   Barbosa Flavia Rodrigues FR   Rodriguez-Caycedo Cristina C   Rodriguez-Flakus Pamela P   Ronikier Anna A   Casas Luis Rubio LR   Rusevska Katerina K   Saar Günter G   Saar Irja I   Salcedo Isabel I   Martínez Sergio M Salcedo SMS   Montoya Carlos A Salvador CAS   Sánchez-Ramírez Santiago S   Sandoval-Sierra J Vladimir JV   Santamaria Sergi S   Monteiro Josiane Santana JS   Schroers Hans Josef HJ   Schulz Barbara B   Schmidt-Stohn Geert G   Schumacher Trond T   Senn-Irlet Beatrice B   Ševčíková Hana H   Shchepin Oleg O   Shirouzu Takashi T   Shiryaev Anton A   Siepe Klaus K   Sir Esteban B EB   Sohrabi Mohammad M   Soop Karl K   Spirin Viacheslav V   Spribille Toby T   Stadler Marc M   Stalpers Joost J   Stenroos Soili S   Suija Ave A   Sunhede Stellan S   Svantesson Sten S   Svensson Sigvard S   Svetasheva Tatyana Yu TY   Świerkosz Krzysztof K   Tamm Heidi H   Taskin Hatira H   Taudière Adrien A   Tedebrand Jan-Olof JO   Lahoz Raúl Tena RT   Temina Marina M   Thell Arne A   Thines Marco M   Thor Göran G   Thüs Holger H   Tibell Leif L   Tibell Sanja S   Timdal Einar E   Tkalčec Zdenko Z   Tønsberg Tor T   Trichies Gérard G   Triebel Dagmar D   Tsurykau Andrei A   Tulloss Rodham E RE   Tuovinen Veera V   Sosa Miguel Ulloa MU   Urcelay Carlos C   Valade François F   Garza Ricardo Valenzuela RV   van den Boom Pieter P   Van Vooren Nicolas N   Vasco-Palacios Aida M AM   Vauras Jukka J   Velasco Santos Juan Manuel JM   Vellinga Else E   Verbeken Annemieke A   Vetlesen Per P   Vizzini Alfredo A   Voglmayr Hermann H   Volobuev Sergey S   von Brackel Wolfgang W   Voronina Elena E   Walther Grit G   Watling Roy R   Weber Evi E   Wedin Mats M   Weholt Øyvind Ø   Westberg Martin M   Yurchenko Eugene E   Zehnálek Petr P   Zhang Huang H   Zhurbenko Mikhail P MP   Ekman Stefan S  

IMA fungus 20180524 1


Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as typ  ...[more]

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