Dataset Information

Performances of full cross-validation partial least squares regression models developed using Raman spectral data for the prediction of bull beef sensory attributes.

ABSTRACT: The data presented in this article are related to the research article entitled "Application of Raman spectroscopy and chemometric techniques to assess sensory characteristics of young dairy bull beef" [1]. Partial least squares regression (PLSR) models were developed on Raman spectral data pre-treated using Savitzky Golay (S.G.) derivation (with 2nd or 5th order polynomial baseline correction) and results of sensory analysis on bull beef samples (n?=?72). Models developed using selected Raman shift ranges (i.e. 250-3380?cm^-1, 900-1800?cm^-1 and 1300-2800?cm^-1) were explored. The best model performance for each sensory attributes prediction was obtained using models developed on Raman spectral data of 1300-2800?cm^-1.

SUBMITTER: Zhao M

PROVIDER: S-EPMC6141602 | biostudies-literature | 2018 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Performances of full cross-validation partial least squares regression models developed using Raman spectral data for the prediction of bull beef sensory attributes.

Zhao Ming M Nian Yingqun Y Allen Paul P Downey Gerard G Kerry Joseph P JP O'Donnell Colm P CP

Data in brief 20180423

The data presented in this article are related to the research article entitled "Application of Raman spectroscopy and chemometric techniques to assess sensory characteristics of young dairy bull beef" [1]. Partial least squares regression (PLSR) models were developed on Raman spectral data pre-treated using Savitzky Golay (S.G.) derivation (with 2nd or 5th order polynomial baseline correction) and results of sensory analysis on bull beef samples (<i>n</i> = 72). Models developed using selected ...[more]

PMID: 30246069

Similar Datasets

Project description:Improvements in bull reproductive performance are necessary to optimize the efficiency of cattle production. Female fertility has been enhanced through assisted reproductive technologies as well as genetic selection; however, improving beef bull fertility has been largely ignored. Phenotypes routinely collected at bull semen collection facilities are believed to affect fertility and provide the phenotypes necessary for a genetic evaluation. The first objective of this study was to determine the significant fixed effects for modeling beef bull fertility using data from bull semen collection facilities. The second objective was to estimate variance components, heritabilities, repeatabilities, and correlations between beef bull semen attributes. Beef bull fertility phenotypes including volume (VOL), concentration (CONC), number of spermatozoa (NSP), initial motility (IMot), post-thaw motility (PTMot), 3-h post-thaw motility (3HRPTMot), percentage of normal spermatozoa (%NORM), primary abnormalities (PRIM), and secondary abnormalities (SEC) were obtained from two bull semen collection facilities. A total of 1,819 Angus bulls with 50,624 collection records were analyzed. Of the fixed class and covariate effects tested, the significant class effects were collection location and collection day within year and the significant covariate effects included age at collection, days since previous collection, and cumulative comprehensive climate index (CCI). For this study, the CCI was calculated for a 75-d period including the 61-d spermatogenesis cycle and 14-d epididymal transit time. The 75 d prior to collection accounted for the environmental stress a bull may have experienced over the course of development of the spermatozoa, which was more significant than the CCI calculated for collection day or spermatogenesis start date. Pre-thaw beef bull semen traits had low heritability estimates of 0.11 ± 0.02 (VOL), 0.09 ± 0.02 (CONC), 0.08 ± 0.02 (NSP), and 0.12 ± 0.03 (IMot). Heritabilities of post-thaw beef bull semen attributes were more variable at 0.10 ± 0.02 (PTMot), 0.05 ± 0.04 (3HRPTMot), 0.10 ± 0.04 (%NORM), 0.03 ± 0.03 (PRIM), and 0.18 ± 0.04 (SEC). Correlations of breeding values for these traits with scrotal circumference (SC) expected progeny difference (EPD) are low. The low to moderate heritability estimates indicate that genetic improvement can be made in beef bull semen quality traits if new tools are developed to augment the scrotal circumference EPD that are currently available within the industry.

Project description:Estimation of individuals' cognitive, behavioral and demographic (CBD) variables based on MRI has attracted much research interest in the past decade, and effective machine learning techniques are of great importance for these estimations. Partial least squares regression (PLSR) is an attractive machine learning technique that can accommodate both single- and multi-label learning in a simple framework, while its potential for MRI-based estimations of CBD variables remains to be explored. In this study, we systemically investigated the performance of PLSR in MRI-based estimations of individuals' CBD variables, especially its performance in simultaneous estimation of multiple CBD variables (multi-label learning). We performed the study on the dataset included in the HCP S1200 release. Resting state functional connections (RSFCs) were used as features, and a total of 10 CBD variables (e.g., age, gender, grip strength, and picture vocabulary) were estimated. The results showed that PLSR performed well in both single- and multi-label learning. In fact, the present estimations were better than those reported in literatures, as indicated by stronger correlations between the estimated and actual CBD variables, as well as high gender classification accuracy (97.8% in this study). Moreover, the RSFCs that contributed to the estimations exhibited strong correlations with the CBD variable estimated, that is, PLSR algorithm automatically selected the RSFCs closely related to one CBD variable to establish predictive models for the variable. Besides, the estimation accuracies based on RSFCs among 100, 200, and 300 regions of interest (ROIs) were higher than those based on RSFCs among 15, 25, and 50 ROIs; the estimation accuracies based on RSFCs evaluated using partial correlation were higher than those based on RSFCs evaluated using full correlation. In addition to the aforementioned virtues, PLSR is efficient in model training and testing, and it is simple and easy to use. Therefore, PLSR can be a favorable choice for future MRI-based estimations of CBD variables.

Dataset Information

Performances of full cross-validation partial least squares regression models developed using Raman spectral data for the prediction of bull beef sensory attributes.

Publications

Performances of full cross-validation partial least squares regression models developed using Raman spectral data for the prediction of bull beef sensory attributes.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets