Dataset Information

Genetic Variation of the Long-Legged Flies Phacaspis mitis Complex (Diptera: Dolichopodidae) in Peninsular Thailand Inferred From Three Mitochondrial Genes.

ABSTRACT: Phacaspis (Meuffels and Grootaert 1988) is a true marine dolichopodid fly genus. They are common on the mud flats in the front of mangroves where they deal with extreme conditions. The genus is represented in southern Thailand by Phacaspis mitis (Grootaert and Meuffels 2001) (Diptera: Dolichopodidae). Previous studies have focused on both taxonomy and classification of this genus, but there are a few studies focusing on this species in terms of molecular genetics. The objective of the present study was to investigate genetic variation and phylogenetic relationships of P. mitis using ribosomal DNA subunit 12S, ribosomal DNA subunit 16S, and cytochrome oxidase subunit I of mitochondrial genes. The specimens were collected in six coastal provinces from the Andaman Sea and the Gulf of Thailand. The phylogenetic relationship of combined mitochondrial genes revealed that P. mitis in peninsular Thailand is a monophyletic group that can be divided into two distinct clades. According to the haplotype network, 16 haplotype patterns were observed in P. mitis, but P. mitis was separated into two major haplotype networks. In addition, a positive correlation between genetic distance (FST) and geographical distance (km) was found among the populations of peninsular Thailand. The level of genetic differentiation between populations is influenced by geographic isolation. Moreover, P. mitis arose in late Eocene (35.5 Mya) and it diversified during the Plio-Pleistocene (3.14 Mya). Although, P. mitis is divided into two populations in this study, it is a well-supported monophyletic group.

SUBMITTER: Kaewkrajang N

PROVIDER: S-EPMC6232956 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature

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Publications

Genetic Variation of the Long-Legged Flies Phacaspis mitis Complex (Diptera: Dolichopodidae) in Peninsular Thailand Inferred From Three Mitochondrial Genes.

Kaewkrajang Natcha N Grootaert Patrick P Boonrotpong Singtoe S

Journal of insect science (Online) 20181101 6

Phacaspis (Meuffels and Grootaert 1988) is a true marine dolichopodid fly genus. They are common on the mud flats in the front of mangroves where they deal with extreme conditions. The genus is represented in southern Thailand by Phacaspis mitis (Grootaert and Meuffels 2001) (Diptera: Dolichopodidae). Previous studies have focused on both taxonomy and classification of this genus, but there are a few studies focusing on this species in terms of molecular genetics. The objective of the present st ...[more]

PMID: 30423176

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Project description:Flesh flies (Sarcophagidae) are necrophagous insects initially colonizing on a corpse. The species-specific developmental data of the flies collected from a death scene can be used to estimate the minimum postmortem interval (PMImin). Thus, the first crucial step is to correctly identify the fly species. Because of the high similarity among species of flesh flies, DNA-based identification is considered more favorable than morphology-based identification. In this study, we demonstrated the effectiveness of combined sequences (2216 to 2218 bp) of cytochrome c oxidase subunit I and II genes (COI and COII) for identification of the following 14 forensically important flesh fly species in Thailand: Boettcherisca nathani Lopes, Fengia ostindicae (Senior-White), Harpagophalla kempi (Senior-White), Liopygia ruficornis (Fabricius), Lioproctia pattoni (Senior-White), Lioproctia saprianovae (Pape & Bänziger), Parasarcophaga albiceps (Meigen), Parasarcophaga brevicornis (Ho), Parasarcophaga dux (Thomson), Parasarcophaga misera (Walker), Sarcorohdendorfia antilope (Böttcher), Sarcorohdendorfia inextricata (Walker), Sarcorohdendorfia seniorwhitei (Ho) and Seniorwhitea princeps (Wiedemann). Nucleotide variations of Thai flesh flies were evenly distributed throughout the COI-COII genes. Mean intra- and interspecific variations ranged from 0.00 to 0.96% and 5.22% to 12.31%, respectively. Using Best Match (BM) and Best Close Match (BCM) criteria, identification success for the combined genes was 100%, while the All Species Barcodes (ASB) criterion showed 76.74% success. Maximum Likelihood (ML) and Bayesian Inference (BI) phylogenetic analyses yielded similar tree topologies of monophyletic clades between species with very strong support values. The achieved sequences covering 14 forensically important flesh fly species including newly submitted sequences for B. nathani, F. ostindicae and S. seniorwhitei, can serve as a reliable reference database for further forensic entomological research in Thailand and in other areas where those species occur.

Dataset Information

Genetic Variation of the Long-Legged Flies Phacaspis mitis Complex (Diptera: Dolichopodidae) in Peninsular Thailand Inferred From Three Mitochondrial Genes.

Publications

Genetic Variation of the Long-Legged Flies Phacaspis mitis Complex (Diptera: Dolichopodidae) in Peninsular Thailand Inferred From Three Mitochondrial Genes.

Similar Datasets

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