Browse
Submit Data
Databases
API
Help

Dataset Information

9 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Potato Virus T from Bolivia, Obtained from a 33-Year-Old Sample.

ABSTRACT: We present the complete genomic sequence of a Potato virus T (PVT) isolate originally obtained from a Bolivian potato sample collected in 1976, and we compare it with the genome of the PVT type isolate from Peru. There is an 81% nucleotide identity between the two genomes of this Andean potato virus.

SUBMITTER: Adams IP

PROVIDER: S-EPMC6256546 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Potato Virus T from Bolivia, Obtained from a 33-Year-Old Sample.

Adams Ian P IP Abad Jorge J Fribourg Cesar E CE Boonham Neil N Jones Roger A C RAC

Microbiology resource announcements 20181108 18

We present the complete genomic sequence of a Potato virus T (PVT) isolate originally obtained from a Bolivian potato sample collected in 1976, and we compare it with the genome of the PVT type isolate from Peru. There is an 81% nucleotide identity between the two genomes of this Andean potato virus. ...[more]

PMID: 30533781

Similar Datasets

A 33-Year-Old Plant Sample Contributes the First Complete Genomic Sequence of Potato Virus U.

Project description:A Potato virus U isolate detected in a Peruvian potato sample collected in 1977 produced the first genome sequence of this virus. When this genome sequence was compared with those of other nepoviruses, the amino acid sequences of RNA1 and RNA2 were most similar to those of subgroup C nepoviruses.

| S-EPMC6298553 | biostudies-literature

Complete Genomic Sequence of the Potyvirus Mashua Virus Y, Obtained from a 33-Year-Old Mashua (Tropaeaolum tuberosum) Sample.

Project description:We present the complete genomic sequence of a new potyvirus we tentatively call Mashua virus Y (MasVY), first isolated in 1984 from a plant of the Andean tuber crop mashua (Tropaeolum tuberosum, family Tropaeolaceae). There was a 70% nucleotide identity between MasVY and a genomic sequence of Verbena virus Y.

| S-EPMC6256436 | biostudies-literature

Complete Coding Sequence of Andean Potato Mottle Virus from a 40-Year-Old Sample from Peru.

Project description:A complete coding sequence of the type strain of Andean potato mottle virus from Peru (isolate Lm) was obtained. Comparison of its RNA1 and RNA2 sequences with variants of this virus isolated in Brazil revealed RNA1 and RNA2 nucleotide identities of 81 to 83% and 70 to 71%, respectively.

| S-EPMC6776769 | biostudies-literature

Coding-Complete Sequences of Barley Virus G Isolates from Australia, Obtained from a 34-Year-Old and a 1-Year-Old Sample.

Project description:Coding-complete sequences of two barley virus G isolates from Australia were obtained from a 34-year-old oat sample (isolate Aus8) and a 1-year-old barley sample (isolate Aus17N). The Aus8 and Aus17N isolates share 96.3% nucleotide identity with each other and 95.7 to 95.8% nucleotide identity with the South Korean isolate Uiseong.

| S-EPMC6872893 | biostudies-literature

First Complete Genome Sequence of Arracacha virus A Isolated from a 38-Year-Old Sample from Peru.

Project description:We present here the first complete genomic sequence of Arracacha virus A from a Peruvian arracacha sample collected in 1975 and compare it with the genomes of other nepoviruses. Its RNA1 and RNA2 both had greatest amino acid identities with those of the subgroup A nepovirus Melon mild mottle virus.

| S-EPMC5477179 | biostudies-literature

Genome Sequence and Phylogeny of a Bean Yellow Mosaic Virus Isolate Obtained from a 14-Year-Old Australian Lentil Sample.

Project description:Using RNA strand-specific sequencing followed by de novo assembly, a Bean yellow mosaic virus (BYMV) genome was obtained from a lentil sample (Aus14BY) collected in Victoria, Australia, in 2005. When compared with 51 BYMV genomes, it closely resembled the Western Australian isolate PN83A (Lupinus angustifolius), with 98.4% nucleotide identity.

| S-EPMC6952669 | biostudies-literature

Full-Genome Sequencing of a Virus from a 33-Year-Old Sample Demonstrates that Arracacha Mottle Virus Is Synonymous with Arracacha Virus Y.

Project description:We describe here the first genome sequence of Arracacha virus Y (ArVY) derived from an arracacha (Arracacia xanthorrhiza) sample originally collected in 1976 in Peru and compare it with other potyvirus genome sequences. It had a 79% nucleotide identity with a 2013 Brazilian Arracacha mottle virus (AMoV) sequence, suggesting that AMoV is ArVY.

| S-EPMC6284719 | biostudies-literature

A 24-Year-Old Sample Contributes the Complete Genome Sequence of Fowl Aviadenovirus D from the United States.

Project description:Here, we report the complete genome sequence of fowl aviadenovirus D (FAdV-D) isolated from a preserved 24-year-old pancreas sample of a broiler chicken embryo. The results of the sequence showed that the viral genome is 44,079 bp long.

| S-EPMC8407710 | biostudies-literature

First Complete Genome Sequence of Potato leafroll virus from Argentina.

Project description:In this study, we determined for the first time the complete genomic sequence of an Argentinian isolate of Potato leafroll virus (PLRV), the type species of the genus Polerovirus The isolate sequenced came from a Solanum tuberosum plant that had been naturally infected with the virus. Isolate PLRV-AR had a nucleotide sequence identity between 94.4 and 97.3% with several known PLRV isolates worldwide.

| S-EPMC5532827 | biostudies-literature

Transcriptome Sequencing Reveals the Genome Sequence of Pea Early Browning Virus from a 29-Year-Old Faba Bean Sample.

Project description:Pea early browning virus (PEBV) is transmitted by soil-inhabiting trichodorid nematodes and via seeds. The transcriptome sequencing method, followed by de novo assembly, revealed the PEBV Libyan isolate LyV66-91 genome. Its RNA1 resembled that of UK isolate SP5 with 93.91% nucleotide identity, and its RNA2 had 63.32% nucleotide identity to that of Dutch isolate E116.

| S-EPMC7348028 | biostudies-literature